Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d07f
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 29 4.0
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 28 5.3
SB_38143| Best HMM Match : Neuromodulin (HMM E-Value=6.4) 28 5.3
SB_18261| Best HMM Match : Cornifin (HMM E-Value=1.6) 27 9.2
SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5) 27 9.2
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 27 9.2
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 NWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINW--AVYKQAVPIPGM 253
NW EQ+ +L F+ + Y R + PP+ + W Y Q + IPG+
Sbjct: 174 NWMGFVNCARNEQEQNLEVFQYGGNIYYRAIKDVPPDQELLVWYGGTYMQFLGIPGI 230
>SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 296 YPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 424
+ D LVES W +V + ID E +AN + Q+EI+ TK
Sbjct: 31 FSTDYVENLVESFWTRVDDKIDKAFHERDAN-KTTQEEIHQTK 72
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 383 ANIASYQKEINATKALLPYDQMTMEDFY--DAHPDLALD-PIKKPTFWPHTPEEQLDYVD 553
A + Y + + T + P MT ++ D++ D + D P + P WP T + +L+ D
Sbjct: 468 AKVEHYSTDNSVTYEITPDKSMTRKEKRGNDSNEDTSDDTPSRIPEHWPITKQTKLEKFD 527
Query: 554 P 556
P
Sbjct: 528 P 528
>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.3 bits (60), Expect = 5.3
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +2
Query: 95 AALAERVPAEQ--KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQ 268
+ +AE V ++Q KA + + +R +LA E ++ A VP+ G +
Sbjct: 738 STVAEPVDSKQDFKAEPDETPLPDPSTMRELLALADE---VSTAAEGSTVPV-GSKQVSE 793
Query: 269 KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 412
E +P P+ Q L S +V +A+++ SNAN Y +E+
Sbjct: 794 AAQEEAPLPDPSTMQDIL--SLVGEVTSAVESDDSSSNANCVEYIEEV 839
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 153 ILKAARCAFCSAGTLSARAAQFTALCDILFAIFRRFFD*SYECTIIPNVKN 1
+L+ AFCS G + FT C L +I D +++C I +KN
Sbjct: 175 LLQKLSLAFCSQGNIRTALQSFTEFCPQLHSISLEGCDINHDC--IHTLKN 223
>SB_38143| Best HMM Match : Neuromodulin (HMM E-Value=6.4)
Length = 217
Score = 28.3 bits (60), Expect = 5.3
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +2
Query: 95 AALAERVPAEQ--KAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVDTFQ 268
+ +AE V ++Q KA + + +R +LA E ++ A VP+ G +
Sbjct: 94 STVAEPVDSKQDFKAEPDETPLPDPSTMRELLALADE---VSTAAEGSTVPV-GSKQVSE 149
Query: 269 KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 412
E +P P+ Q L S +V +A+++ SNAN Y +E+
Sbjct: 150 AAQEEAPLPDPSTMQDIL--SLVGEVTSAVESDDSSSNANCVEYIEEV 195
>SB_18261| Best HMM Match : Cornifin (HMM E-Value=1.6)
Length = 500
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 313 DGTCRIAVESSQECHRRVYPRVQCQHCILPKRNQCN 420
D C + CH R Y C H + NQCN
Sbjct: 35 DNPCHTRTDRDNPCHTRTYRDNPC-HTRTDRDNQCN 69
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 313 DGTCRIAVESSQECHRRVYPRVQCQHCILPKRNQCN 420
D C + CH R Y C H + NQCN
Sbjct: 225 DNQCNTRTDRDNPCHTRTYRDNPC-HTRTDRDNQCN 259
>SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)
Length = 350
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 143 QQGAPFVRRELSQREQPS 90
QQ PF R +L QREQPS
Sbjct: 89 QQTPPFTRGQLVQREQPS 106
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +3
Query: 357 STRLSKSPMPTLH----PTKKKSM--QPRPYCRMTR*PWKTSMMPILTWPLIPSRSQPSG 518
S L SP P+L P K ++ P P ++ P+K++ +P+ P + RS P
Sbjct: 48 SAALPSSPQPSLQVRTPPFKSAALPSSPHPSLQVRTPPFKSAPLPLSPQPSLQVRSPPFK 107
Query: 519 HTLRKSSSTMSTQ 557
SS S Q
Sbjct: 108 SAAFPSSPQPSLQ 120
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +3
Query: 357 STRLSKSPMPTLH----PTKKKSM--QPRPYCRMTR*PWKTSMMPILTWPLIPSRSQPSG 518
S L SP P+L P K + P+P ++ P+K++ P P + RS P
Sbjct: 88 SAPLPLSPQPSLQVRSPPFKSAAFPSSPQPSLQVHSPPFKSAAFPSSPQPSLQVRSPPFK 147
Query: 519 HTLRKSSSTMSTQ 557
T R SS S Q
Sbjct: 148 STPRPSSPQPSFQ 160
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 299 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQK-----EINATKALLPYDQMTMEDF 463
PA ALV+ V+ AID F++ S +N + + IN KA LP +
Sbjct: 660 PAQNVEALVQQAKACVQPAIDWFLRNSMSNYTTRSRLRDDCIINGLKAELP-------AY 712
Query: 464 YDAHPDLALDPIKKPTFWPHTPEEQLDY 547
A D+ ++ ++ W H +EQL +
Sbjct: 713 LAATADVVINTEERKVKWWHDHKEQLPH 740
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,429,093
Number of Sequences: 59808
Number of extensions: 471111
Number of successful extensions: 1496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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