Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d07f
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   2.7  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   2.7  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   2.7  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   2.7  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U23526-5|AAB36850.1|  391|Caenorhabditis elegans Acyltransferase...    28   6.1  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
 Frame = +2

Query: 62  AKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVP 241
           AKR++ S+VNW+ LAER+  E  A L   K  S  +   V   P + PKI++A  K+A+P
Sbjct: 5   AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64

Query: 242 I-PGMVDTFQKQYEALKIPYPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEIN 415
               ++D+ QKQYE++KIPY       L E  QW    NA     +   A+     K++ 
Sbjct: 65  AHSAVLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVE 124

Query: 416 ATKALLP----YDQMTMEDFYDAH 475
              A  P    +D+    +++ AH
Sbjct: 125 EKWAKAPPVEHFDRQHFVEYFPAH 148


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/77 (22%), Positives = 36/77 (46%)
 Frame = +2

Query: 74  SQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGM 253
           +++   W A +   P    + +  ++  SD  LR V +NP +   I+W    +   +   
Sbjct: 299 TENTTGWRAFSSTSPNPTSSRV--WQYLSDTPLRVVTSNPTDLENISWTELNEQPYV--N 354

Query: 254 VDTFQKQYEALKIPYPA 304
           +D  +  Y+ +++P PA
Sbjct: 355 LDRLKTIYDVVEVPQPA 371


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 117 GTLSARAAQFTALCDILFAIFR---RFFD*SYECTIIPNVKN 1
           G++  R   FT +CDI+F  F    + FD SYE  ++  ++N
Sbjct: 311 GSIEQRFGNFTEMCDIMFTHFEAKAQMFD-SYEAKMLVFMRN 351


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 122 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 259
           E K+   A+  ++D +  R  ANP  PPK+  A  K+  P+P   D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 122 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 259
           E K+   A+  ++D +  R  ANP  PPK+  A  K+  P+P   D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 386 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 553
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 386 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 553
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/85 (20%), Positives = 39/85 (45%)
 Frame = +2

Query: 230 QAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKE 409
           Q +  PG+   F+       +P     Q  +V    NQ+K  I+A +  S++  +   + 
Sbjct: 375 QIIDRPGIRSLFKFVLPEYHMPSGDVFQATIVPQLLNQMKQQIEALVHNSSSLSSIPDQV 434

Query: 410 INATKALLPYDQMTMEDFYDAHPDL 484
           + ++ A   Y+ +++ +   A P++
Sbjct: 435 MTSSSATSSYEDVSVNESQMAGPNV 459


>U23526-5|AAB36850.1|  391|Caenorhabditis elegans
           Acyltransferase-like protein 12 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 317 ALVESQWNQVKNAIDAFIQESNANIASYQKE 409
           A+V + WN V   + A + E   N+A Y +E
Sbjct: 86  AMVNAHWNAVSVFVGATVTEYGTNLAGYAEE 116


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 360 TRLSKSPMPTLHPTKKKSMQPRPYCRMTR*P 452
           T  +K P PT  PT   ++ P+P    TR P
Sbjct: 257 TSPTKPPTPTSRPTSAPTIPPQPSANSTRAP 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,795
Number of Sequences: 27780
Number of extensions: 349561
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)