Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d07f
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 GNSLSESSPVYGTL*YSFRHFSAFFRLKLRMHNN 17
           G+  SE +P  G      +H   +FR  LR+H+N
Sbjct: 3   GSRSSEINPKEGLYDEGGKHTVHWFRKGLRLHDN 36


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +2

Query: 299 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHP 478
           PA+    +      +  + +D F++E  A++A   +  + T ++ P  +    +   A+P
Sbjct: 54  PAEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANP 113

Query: 479 DLA 487
            LA
Sbjct: 114 LLA 116


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 125 QKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPG 250
           Q  H AA++  + N + RVL+   +   +    YK  V + G
Sbjct: 99  QDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIG 140


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 125 QKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPG 250
           Q  H AA++  + N + RVL+   +   +    YK  V + G
Sbjct: 99  QDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIG 140


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  GIIVHS*L*SKKRRKMAKRISQSAVNWAALAERVPAEQKAHLAAFKI 154
           G++++S +     R  + R+    + WA  A  + A   A+LAAF +
Sbjct: 619 GVLLNSGIGEGTPRSFSARVL--GMVWAGFAMIIVASYTANLAAFLV 663


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 299 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 412
           P    T LVE   N+++NA+   + +++       +E+
Sbjct: 351 PGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILREL 388


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 345 SRMPSTRLSKSPMPTLHPTKKKSMQPR 425
           +++P T ++KS +  +H TK    Q +
Sbjct: 230 TKLPDTSMAKSFVRKVHATKPPKPQTK 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,797
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)