Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06r
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q898H9 Cluster: Transglutaminase-like predicted proteas...    36   1.4  
UniRef50_A5TXQ0 Cluster: Possible AraC family transcriptional re...    33   9.6  

>UniRef50_Q898H9 Cluster: Transglutaminase-like predicted protease;
           n=1; Clostridium tetani|Rep: Transglutaminase-like
           predicted protease - Clostridium tetani
          Length = 291

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 727 DKRVGKIKSDIGTDSQSNYTLTSPLHNYLVAHSVFGT 617
           DKRV  I SDI TD  ++Y     +H+Y+VA+  + T
Sbjct: 147 DKRVESILSDIITDGMNDYAKEKAIHDYIVANVQYDT 183


>UniRef50_A5TXQ0 Cluster: Possible AraC family transcriptional
           regulator; n=1; Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953|Rep: Possible AraC family
           transcriptional regulator - Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953
          Length = 515

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +3

Query: 12  VIDQILNLENINRIQKFVKKSLR--INEIKVKSNAKNLL 122
           +I +++NLE +N I  F K SL   IN+IK+K+N +N L
Sbjct: 80  LIKKLINLELLNYIFNFSKNSLSSLINKIKLKNNNRNNL 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,751,781
Number of Sequences: 1657284
Number of extensions: 8301436
Number of successful extensions: 18281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18275
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)