Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06r
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              25   0.74 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 646 NYEAVTSECNSIENQ-FRCPILFYQPFYLSL 735
           +YE    +  +I N+ FRCP   +QP +L +
Sbjct: 14  SYELPDGQVITIGNERFRCPEALFQPSFLGM 44


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 147 FFLMCPIFKVSFSHY 103
           +++ CP   V+F+H+
Sbjct: 187 YYISCPEISVNFAHF 201


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 529 IFIAIYCFEKKLKGKIKMTN*N*LVFDL 612
           +FIAI CF   L G   +T     VF L
Sbjct: 417 LFIAIVCFVSYLIGLFCITEGGMYVFQL 444


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 529 IFIAIYCFEKKLKGKIKMTN*N*LVFDL 612
           +FIAI CF   L G   +T     VF L
Sbjct: 470 LFIAIVCFVSYLIGLFCITEGGMYVFQL 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,630
Number of Sequences: 438
Number of extensions: 3270
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)