Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6UBQ0 Cluster: Transcriptional regulator, LysR family;...    33   5.6  
UniRef50_Q8K9B8 Cluster: DNA polymerase III subunit delta; n=2; ...    33   5.6  
UniRef50_Q97EV0 Cluster: Zn-dependent peptidase, insulinase fami...    32   9.7  
UniRef50_Q0G9Q4 Cluster: Putative membrane protein ycf1; n=2; co...    32   9.7  

>UniRef50_A6UBQ0 Cluster: Transcriptional regulator, LysR family;
           n=1; Sinorhizobium medicae WSM419|Rep: Transcriptional
           regulator, LysR family - Sinorhizobium medicae WSM419
          Length = 320

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 353 RILARHKRYAGYTSANRTYSSTLEVLIGEHENAEILFEFYLRPSGRINLRL 505
           R+L R  R    T+   +YS ++  ++G+ E AE+  +    P GR+ + L
Sbjct: 47  RLLQRSTRSISLTAEGNSYSESVRRILGDMEEAELAIQPGAEPRGRLRVSL 97


>UniRef50_Q8K9B8 Cluster: DNA polymerase III subunit delta; n=2;
           Buchnera aphidicola|Rep: DNA polymerase III subunit
           delta - Buchnera aphidicola subsp. Schizaphis graminum
          Length = 338

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 27/93 (29%), Positives = 42/93 (45%)
 Frame = -1

Query: 445 FVLSNKYFEGG*VCSVCARITSISFVTCKNPLHDLDPI*TSFDTLQIIEPIY*INAIVQN 266
           F+L +KY+EG  +C    +I  I  +T  N    ++ I    +   I  P+  INAI   
Sbjct: 167 FLLLHKYYEGNTLC--LNQILDILSITWPNENIKIEKIKKIINQFSIFSPVNWINAIF-- 222

Query: 265 VF*YIL*LSNNNKKKRTIIFNNLFENFTYPILL 167
                    N NKKK   I ++ F+    P++L
Sbjct: 223 ---------NKNKKKAIYILDSFFKQKYNPLIL 246


>UniRef50_Q97EV0 Cluster: Zn-dependent peptidase, insulinase family;
           n=7; Clostridiaceae|Rep: Zn-dependent peptidase,
           insulinase family - Clostridium acetobutylicum
          Length = 976

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 413 STLEVLIGEHEN--AEILFEFYLRPSGRINLRLNNFTFYKHL 532
           S LE++I +  N  A I  + Y  PSG  + RLN  +FYK +
Sbjct: 671 SRLEMIINQSGNSIAAIRLKSYFSPSGEYSERLNGISFYKFI 712


>UniRef50_Q0G9Q4 Cluster: Putative membrane protein ycf1; n=2; core
           eudicotyledons|Rep: Putative membrane protein ycf1 -
           Daucus carota (Carrot)
          Length = 1826

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 452 EILFEFYLRPSGRINLRLNNFTFYKHLKARSNAYRWSCTAYGSK 583
           +I+F FYL+P  R  LR  +F+ YK LK       +  TA+G++
Sbjct: 847 KIVFPFYLKPWHRSKLR-TSFSSYKDLKKEEQPKFYFLTAWGAQ 889


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,135,844
Number of Sequences: 1657284
Number of extensions: 11511851
Number of successful extensions: 30134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30121
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)