Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       28   0.073
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    28   0.073
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 503 LNNFTFYKHLKARSNAYRWSC--TAYGSKW--KCKAHL 604
           +N      H+K+ SN YR+SC   +Y +K+    K HL
Sbjct: 269 VNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHL 306


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 503 LNNFTFYKHLKARSNAYRWSC--TAYGSKW--KCKAHL 604
           +N      H+K+ SN YR+SC   +Y +K+    K HL
Sbjct: 27  VNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHL 64


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 77  DFPEFSNFLVSALFIEKYVPNSSIYN 154
           +F   S    S LFIE    N+ ++N
Sbjct: 13  EFDSDSKLPFSGLFIENQAGNAPVFN 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,379
Number of Sequences: 336
Number of extensions: 3238
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)