Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   1.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.9  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   2.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   6.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   6.7  
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    25   8.9  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   8.9  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   8.9  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.9  

>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 599 ALCISISNRKQCSSSGTRWTWPSNAC 522
           AL ISI N+ +     + W+WPS  C
Sbjct: 265 ALKISILNKDRDEIGSSTWSWPSQNC 290


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 85  WKVQLFSTTKQTKFEYFNSYVY 20
           +++Q+F+T K T F+Y + Y Y
Sbjct: 410 YRLQVFATAKVTFFQYLHDYSY 431


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 366 VTNDMLVIRAQTEHTHPPSKYLLESTKMQRSYL 464
           +TND   I  + E  HP +K ++++T+ Q + L
Sbjct: 64  LTNDAATIIRELEVIHPAAKLVVDATQQQENEL 96


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 569  QCSSSGTRWTWPSNACRK*NCL 504
            +C+S+ + + WP N C+  +CL
Sbjct: 1107 KCNSTMSPFWWPGNICQACHCL 1128


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -1

Query: 214 IIFNNLFENFTY--PILLHYNKII 149
           ++ +NL +NF +  PI LH++KII
Sbjct: 262 LLQHNLLQNFEFENPIKLHFDKII 285


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
 Frame = +2

Query: 353 RILARHKRYAGYTSANRTYSSTLEVLIGEHENAEILFEFYLRPSGRINLRLNN----FTF 520
           ++L   K Y G   +      + E       N  +  + YLR    I  RL+N    F F
Sbjct: 564 QLLKHFKSYMGQNLSKAVQDESFEKPKNSTSNTMLFMQHYLRTRQAIMFRLSNGIFQFNF 623

Query: 521 YKHLK 535
             H K
Sbjct: 624 LDHRK 628


>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 461 IRSLHFRALQ*VLRGWMSMFCLRSYNQHIVCDVQESSARPG 339
           I S   + L  V   W        ++ H+V D+Q  SA PG
Sbjct: 3   INSSGTKVLSFVRSVWQDFVNTNGFDAHVVSDIQIISAVPG 43


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 602 DALCISISNRKQCSSSG 552
           D LC  + N+ +CSSSG
Sbjct: 520 DDLCSKLKNKAKCSSSG 536


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 85  WKVQLFSTTKQTKFEYFNSYVY*T 14
           +K++ FS  +  K  YF++YVY T
Sbjct: 267 YKIREFSELENAKAMYFDAYVYET 290


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 238 NNNKKKRTIIFNNLFENFTYPILLHYN 158
           N+ K KRT+ +  L  +F++  L  YN
Sbjct: 336 NSPKNKRTVSYERLANSFSFNALNDYN 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,819
Number of Sequences: 5004
Number of extensions: 52318
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)