Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0019 - 20103044-20103760                                         29   3.0  
02_02_0278 + 8500983-8501253,8501343-8501558,8501704-8501855,850...    29   3.0  
09_05_0018 - 20098965-20099705                                         29   4.0  
06_01_0184 + 1433798-1434442                                           27   9.2  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    27   9.2  

>09_05_0019 - 20103044-20103760
          Length = 238

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 476 RPSGRINLRLNNFTFYKHLKARSNAYRWSC 565
           RP+GR   R      ++ ++ R NA RW C
Sbjct: 36  RPAGRTKFRETRHPVFRGVRRRGNAGRWVC 65


>02_02_0278 +
           8500983-8501253,8501343-8501558,8501704-8501855,
           8501949-8502222,8503569-8503754,8503939-8503976
          Length = 378

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 28/105 (26%), Positives = 43/105 (40%)
 Frame = +2

Query: 305 YLQGVE*SLDGVQVVQRILARHKRYAGYTSANRTYSSTLEVLIGEHENAEILFEFYLRPS 484
           YL  ++   DG       + R+  ++   +A+      LE L  +H N  I++  Y  P 
Sbjct: 237 YLNMLDEPADGYGPQSGCVRRYNTFSWVHNAH--LKRMLEKLRPKHPNVRIIYGDYYTPV 294

Query: 485 GRINLRLNNFTFYKHLKARSNAYRWSCTAYGSKWKCKAHLVITDK 619
            +  L+   F FYK L       R  C A GS  K   +  +T K
Sbjct: 295 IQFMLQPEKFGFYKQLP------RACCGAPGSVAKAAYNFNVTAK 333


>09_05_0018 - 20098965-20099705
          Length = 246

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 464 EFYLRPSGRINLRLNNFTFYKHLKARSNAYRWSC 565
           ++  RP+GR   R      Y+ ++ R  A RW C
Sbjct: 28  QYKKRPAGRTKFRETRHPVYRGVRRRGGAGRWVC 61


>06_01_0184 + 1433798-1434442
          Length = 214

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 476 RPSGRINLRLNNFTFYKHLKARSNAYRWSC 565
           RP+GR   R      Y+ ++ R  A RW C
Sbjct: 19  RPAGRTKFRETRHPVYRGVRRRGPAGRWVC 48


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 502  AEIDPTAWTQVELK*DLCIFVLSNKYFEGG 413
            A + P AW  +E    LC  VL  KYF  G
Sbjct: 1263 ALLAPQAWRLIEFPNSLCAQVLKAKYFPHG 1292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,257,716
Number of Sequences: 37544
Number of extensions: 286299
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)