Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)                 29   3.1  
SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)                     29   3.1  
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               28   5.4  
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_24795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)
          Length = 412

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 SCTSQTICWLYERKQNILIHPRSTYWRARK 447
           +CT   ICW+  +    L +P+ ++W A K
Sbjct: 240 TCTRPDICWVVTKLSQHLSNPQQSHWTAVK 269


>SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)
          Length = 283

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 SCTSQTICWLYERKQNILIHPRSTYWRARK 447
           +CT   ICW+  +    L +P+ ++W A K
Sbjct: 75  TCTRPDICWVVTKLSQHLSNPQQSHWTAVK 104


>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 291

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 388 YERKQNILIHPRSTYWRARKCRDLI*VLLASKRSDQSPLKQFYFL 522
           Y RK+      +  Y+R R+C  L  VL   K  D  PL Q Y L
Sbjct: 121 YYRKRRCPPLTKGNYYRKRRCPPLTSVLTTGK--DDVPLDQVYLL 163


>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 385  LYERKQNILIHPRSTYWRARKCRDLI*VLLASKRSDQSPLKQFYFLQAFEGQVQRVPLEL 564
            LY R+    +HP  T W+    R     LL SK+   SP    Y    +EG V+    E 
Sbjct: 870  LYSRESYFGVHPSGTQWQPEAVR-----LLLSKKHVTSPSDPMYNYH-YEGSVKWASKER 923

Query: 565  HCLR 576
               R
Sbjct: 924  QTFR 927


>SB_24795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 446 FRALQ*VLRGWMSMFCLRSYNQHIVCDVQESSARPGPHLDFIR 318
           F A    + G+++   L   + HI CD QES  R   +   IR
Sbjct: 79  FGAFNAPMEGFIAAIKLSYVSGHITCDTQESQTRTNQYFIVIR 121


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 344 PGPHLDFIRHLANN*TYILN*CNRSECLLIHFIIEQQ 234
           PGPHL+ +R + N   +IL   +  E LL     EQ+
Sbjct: 864 PGPHLETLRAVTNVDVFILERSDLDEILLFDKATEQR 900


>SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 534 RPGPTRTAGAALLTVRNGNAKRISSSPI 617
           +PG   T GAALL  R G   R+S+S +
Sbjct: 34  QPGHPVTIGAALLVFRRGRDPRLSNSSV 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,304
Number of Sequences: 59808
Number of extensions: 360984
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)