Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   3.4  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   6.0  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   6.0  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   7.9  

>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 326  SLDGVQVVQRILARHKRYAGYTSANRT 406
            SL G  +   +   HK + GYT  +RT
Sbjct: 2800 SLTGASLFNAVGGVHKAFIGYTGISRT 2826


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 401 CLRSYNQHIVCDVQESSARPGPHL 330
           CL  Y   I C+  ++     PHL
Sbjct: 276 CLNQYKMQIFCNETQAHLEMNPHL 299


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 214 IIFNNLFENFTYPILLHYN 158
           I+F N+F++  Y  +LH N
Sbjct: 238 ILFGNIFDSTEYSDMLHLN 256


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 567 LLTVRNGNAKRISSSP 614
           L T RNGN+K ++ SP
Sbjct: 258 LQTDRNGNSKNLTGSP 273


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,118
Number of Sequences: 2352
Number of extensions: 13244
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)