Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d06f
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...    29   3.6  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    28   4.7  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    28   4.7  
AF000266-9|AAC71169.1|  566|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    27   8.2  
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        27   8.2  

>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 360 LHVTNDMLVIRAQTEHTHPPSKYLLESTKMQRSYL 464
           L VTND   I  + E  HP ++ ++ +T+MQ   +
Sbjct: 62  LFVTNDAATILKELEIQHPAARIIIMATEMQEKQI 96


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 503  LNNFTFYKHLKARSNAYRWSCTAYGSKWKCKAHLVITDKLE 625
            L ++T ++H      +       YGS WK KA   +TD +E
Sbjct: 2053 LVDWTSHEHTATSGVSLALQLAVYGSNWKTKAKERLTDAME 2093


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 503  LNNFTFYKHLKARSNAYRWSCTAYGSKWKCKAHLVITDKLE 625
            L ++T ++H      +       YGS WK KA   +TD +E
Sbjct: 2053 LVDWTSHEHTATSGVSLALQLAVYGSNWKTKAKERLTDAME 2093


>AF000266-9|AAC71169.1|  566|Caenorhabditis elegans Hypothetical
           protein W08F4.2 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 138 TLQFIILL*CNK--IGYVKFSNKLLNIMVR 221
           TL  + +L C++  + Y  FSNK+LNI VR
Sbjct: 429 TLDNLFMLNCSQLFVNYRTFSNKVLNIFVR 458


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 GFLHVTNDMLVIRAQTEHTHPPSKYLLESTKMQ 452
           G + VTND   I  Q E  HP  K L+E  ++Q
Sbjct: 54  GDVIVTNDGATILKQLEVEHPAGKVLVELAQLQ 86


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 GFLHVTNDMLVIRAQTEHTHPPSKYLLESTKMQ 452
           G + VTND   I  Q E  HP  K L+E  ++Q
Sbjct: 54  GDVIVTNDGATILKQLEVEHPAGKVLVELAQLQ 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,517
Number of Sequences: 27780
Number of extensions: 289336
Number of successful extensions: 633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)