Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d05r
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    30   0.28 
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   2.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   2.6  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   2.6  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   4.5  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   4.5  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   7.9  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 218 VFDFDRFCLDSEGYVVEAQSARSVRAGHETERVQSGLQFGGGANKHVH 361
           +++FDRF  D   ++    +  SV  G ET   +  + +GG  ++ +H
Sbjct: 507 LYEFDRFESDKNLWIWNDMNEPSVFRGPETSMHRDAIHYGGWEHRDIH 554


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 604 FTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSW 494
           F  + R W      +  F ++FM + + + V G++SW
Sbjct: 397 FLLFVRGWLSPLGINRIFGSIFMGKTRQDRVYGMYSW 433


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -1

Query: 252 SLSKQNRSKSKTY---RSLTPLTQLGKKIIFKKTNKSSLKGR 136
           S S ++ SKS++Y   RS+TP+  +  K   +K  + S +GR
Sbjct: 645 SRSTRSYSKSRSYSRSRSVTPINNINHKKYIRKDRELSPRGR 686


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 598 KYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSW 494
           KY ++W   CK +  F    M +LKS++ L +  W
Sbjct: 466 KYRKYWPDFCKAAGVF---CMGDLKSSDSLKVCDW 497


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 131 IVLPLREDLFVFLNIIFLPSWVSGVNDR*VFDFDRFCLDSEGY-VVEAQSARSVRAGHET 307
           I+LP R   F F+N++   S  + V +R  FD + F ++ E     + +  R + +G+  
Sbjct: 262 ILLPTRNSAFEFINLLISYSGTNQVENRKRFD-NEFSIEKEVISEKKPEDFRYLFSGNTD 320

Query: 308 ERVQSGLQF 334
           +  + G++F
Sbjct: 321 DMFRLGVKF 329


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 89  RYTNVCCRKYNNKTIVLPLREDLFVFLNII 178
           R  N   +  N+K I  PLRE++F   N++
Sbjct: 376 RVLNTVTKSNNSKPIQRPLRENIFTLPNLL 405


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 592 ARHWTGLCKCSCAFENVFMAELKSN 518
           A+ +  +CK +  F+NV+  ELK N
Sbjct: 67  AQDFVNVCKDASVFQNVYYYELKKN 91


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 603 SRSTHATGPAFANAVAPSRTCL 538
           S ST    P F N  AP+ TCL
Sbjct: 45  SNSTTVPPPPFVNTTAPNGTCL 66


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 563 AFAKAGPVACVLREPNLSQQLNFVREY 643
           A  K G + C++R  NLS   N  R+Y
Sbjct: 604 AVQKLGGLQCIIRNDNLSHIFNCSRKY 630


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 688 PHYFLSQQ-RHYSAE*VFPNKVELLRKIWF 602
           P++F SQQ +HY  + +FP   E  R+I F
Sbjct: 677 PNFFYSQQVKHYKQD-LFPANSEAARRISF 705


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -3

Query: 583 WTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLIL 404
           W GL K     + VFM   K N+    ++ L F  +++D  A  L  +      GKG  L
Sbjct: 226 WKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEF--KDVDESAKAL--MKARTYPGKGFTL 281

Query: 403 KQHSV 389
               V
Sbjct: 282 ASRKV 286


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 583 WTGLCKCSCAFENVFM-AELKSNEVLGLHSWL 491
           WTGLC  S  F N F+ + + S E + +  W+
Sbjct: 329 WTGLCYES-GFANTFLISGIHSKEAISILKWI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,602
Number of Sequences: 5004
Number of extensions: 58468
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)