Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d05r
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    48   9e-06
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066     29   3.5  
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426...    29   3.5  
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983...    28   6.2  
07_03_0256 - 15875066-15877025,15877292-15877911                       28   6.2  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     28   6.2  
01_01_0091 - 719842-720902,721042-721071,721521-722226                 28   6.2  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = -3

Query: 622 LLRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGY 443
           +L  +WF  Y R   G    S AFE+VF+ E+K     G +    F   E +   +Y GY
Sbjct: 338 MLTSLWFDLYGRG--GSSSSSSAFEHVFVGEIKGRRGQGENE---FYLEEANGNVDYQGY 392

Query: 442 I------DKLDLSGKGLILK--QHSVLSETKDAPEVNMFVGTSPELETALYTLCF 302
           I      +  D   + L ++   H VL            +G SPE E ALYTLCF
Sbjct: 393 IFPRRRGESPDSETQLLTIQFEWHGVLKSVSST-----LIGVSPEFEVALYTLCF 442


>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
          Length = 489

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 401 AALGVERNERRARSEHVCWHLPRTGDRSVHALFH 300
           A +GV+  ER     H C++   TG+ SVH   H
Sbjct: 175 AFVGVQNWERHFWDAHACFYSSETGEWSVHINIH 208


>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
            4262554-4262718,4262811-4263178,4263225-4263861,
            4263952-4265844,4266325-4266672
          Length = 1482

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 296  GHETERVQSGLQFGGGANKHVHFGRVFRFAQHRVLLEDQS 415
            G+ET+  +SG+Q  GG  + +   R     Q R+LL D++
Sbjct: 1363 GYETQVGESGVQLSGGQKQRIAIARAI-VKQARILLLDEA 1401


>08_02_0519 -
           18097509-18097726,18097803-18097967,18098095-18098305,
           18099151-18099419,18100915-18101017
          Length = 321

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 294 ARTDLADCASTTYPSLSKQNRSKSKTYRSLTPLTQLGKKIIFKKTNK 154
           AR  +    +T Y S++K  RSK K  R+++P +   K I    TNK
Sbjct: 186 ARAAVKSLLATNYTSMAKIVRSKEKLIRAISP-SGYNKGIDSNPTNK 231


>07_03_0256 - 15875066-15877025,15877292-15877911
          Length = 859

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 174 LFFYQVG*AXSMTGKFSTLIDFVWIVKGMLLKRSLQG----LSGRVMKQS 311
           LF + +G   S+TGK   +    W +KG+ L   + G    L  RVM +S
Sbjct: 11  LFVHHLG---SLTGKAGVIKKMAWRIKGLQLSHRISGRIQELKARVMDES 57


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 619 LRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLG 506
           L  IW  K+  H TGLC      +N F+ E +  ++LG
Sbjct: 397 LLMIWPPKFPAHLTGLCTLVYLVDNQFLLE-RGMKILG 433


>01_01_0091 - 719842-720902,721042-721071,721521-722226
          Length = 598

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 578 GPVACVLREPNLSQQLNFVREYSFS*VMPLLTKKVMRLLM 697
           GP++C+    N SQ L  V  Y+F  ++PL  K V   +M
Sbjct: 129 GPISCL---SNASQSLYLVAPYAFVSILPLYCKVVSTEIM 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,185
Number of Sequences: 37544
Number of extensions: 358776
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)