Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d05f
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    30   0.24 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.72 
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   1.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.9  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   5.1  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   5.1  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 227 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 361
           ++DYA K     L      +  DDDL+++S  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 21/90 (23%), Positives = 36/90 (40%)
 Frame = +2

Query: 278 QDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGP 457
           +  T   DLL+V +++   D +NA       ++     + R  +        PEN+    
Sbjct: 550 EQETIPSDLLKVRKDLL--DDSNAAKDTMDKVKKHLKSLLRVGDTARKEFTWPENMPKPC 607

Query: 458 TIRPFVALFDNYHKNVIRPEFVTPNEETEQ 547
            +   V     YH+ V+R  F+    E EQ
Sbjct: 608 EVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 418 EFIKRS*EC-MERTNNKTFCCTIRQLSQECDQTRVCYAE*RNGTNH-LHQH 564
           E  K   +C  +R  + T CC IR ++ +CD          N T H +H+H
Sbjct: 28  ELNKNPKDCNSKRKRSVTECCEIRLITSKCDFESTQQLVHHNCTGHKVHEH 78


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
            Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 292  GRRILCLAQQIFVALLLRI-VNDATDNCAYLLESVLSCVPLLTSHMIANQVGKDVVEDLA 116
            G+ ++    + FV     +   D  +  AYLL+S+  C P +T H   +    D+ E  A
Sbjct: 795  GKHLVMAKTEPFVITATSMNTTDVDEVSAYLLKSIKFCDPNITPH-DGDASLCDISEGSA 853

Query: 115  RSLGYVISVTY 83
            R L  +I  ++
Sbjct: 854  RKLTSIIKYSF 864


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 317 EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTI-RPFVALFDNY 493
           E+ F  D +   N I    Q +  P +     + + L  P +  +       F   F+N 
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237

Query: 494 HKNVIRPEFVTPNEETEQTTYINTILATGP 583
            +++ R +  +PN   ++  YI++ ++  P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 223 TDNCAYLLESVLSCVPLLTSHMIANQVGKDVVEDLARSL 107
           T+ C+   ++   CV L   H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 275 AQDSTTDDDLLRVSEEMFNADI 340
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,217
Number of Sequences: 5004
Number of extensions: 50086
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)