Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d05f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 46 3e-05
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 31 0.74
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 29 3.0
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 29 3.0
09_03_0127 + 12573429-12574857,12575269-12575903 28 5.2
11_01_0470 + 3645010-3647686,3647804-3648168 27 9.2
02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224 27 9.2
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 398 RNDEAQSNLLN-VPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILA 574
+ D A L + + ++V PT F AL DNY+ + E VT ++ E+ +I I
Sbjct: 252 KGDMASETLFSWLGDDVLRKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIAR 311
Query: 575 TGPIRSLITFLVNKGI 622
T PI+ L +LV KG+
Sbjct: 312 TAPIKYLHRYLVLKGV 327
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 338 INNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTIRPFV 475
+N A+N +Q +Q + P D +SN++N + T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -1
Query: 334 CIKHFLANSEEVIVGRRILCLAQQIFVA---LLLRIVNDATDN 215
C ++ L + +GR + CL+Q+++ LLL +V +A DN
Sbjct: 1151 CTENSLLKKQHARLGRALHCLSQELYSQDSHLLLELVQNADDN 1193
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 281 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 373
D T D L VS EM+ D NN +Y+Q +L
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQRHL 703
>09_03_0127 + 12573429-12574857,12575269-12575903
Length = 687
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 170 QQGNTAQNTFQQIGTVVGGVVDYAKKKSYEDLLR 271
Q+ TA +T + T + A+K +EDLLR
Sbjct: 356 QRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLR 389
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 317 EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLL-NVPENVWSGPTIRPFVALFDN 490
EE+F + N + YI +L GK +S + ++L ++PE ++ PTIR F+N
Sbjct: 442 EELF-LESNQLYGYIPSSL-GKLNVLSVLSMSNNSLHGSIPEEIFRIPTIRKISLSFNN 498
>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
Length = 508
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/108 (22%), Positives = 47/108 (43%)
Frame = +2
Query: 65 FVVFLGVCHADDIAQAAGQIFNNILPNLISNHVTGQQGNTAQNTFQQIGTVVGGVVDYAK 244
F L C A ++ + + LP+ I + Q N+ I + GGVV +A
Sbjct: 106 FPTVLYACSALELLDLSNNQLSGRLPDDIDKLSSDMQHLNLSNSIVPISVIAGGVVIFAV 165
Query: 245 KKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTT 388
+A++ D + +S++M + ++NA + +++ G TT
Sbjct: 166 GCVVASCRCRARND--DMTPIVLSDKMEDHLVHNAVDVNRISSTGTTT 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,533
Number of Sequences: 37544
Number of extensions: 318231
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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