Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d05f
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      27   8.2  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   8.2  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +2

Query: 254 YEDLLRQAQDSTTDDDLLRVSEEM--FNADIN-NAFNY-IQVNLQGKTTPMSRNDEAQSN 421
           +   +RQ  D T+D+D+ R+  EM   N  ++   FN+ +++ L G            + 
Sbjct: 505 FSSFIRQEGDKTSDEDIYRICSEMRRTNGKVHKKMFNFELELTLAGSNKSKEYQSHGSNL 564

Query: 422 LLNVPENVWSGPTIRPFVALFDNYHKNVI 508
            LN    +     I  + A  +  +KNVI
Sbjct: 565 TLNSERVIHEAMEIPIYQASLNKSYKNVI 593


>Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical
           protein F32G8.3 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VSSFGVTNSGLITFL**LSNS-ATKGLIVGPLHTFSGTFNKF 418
           +SS+   NSG+   +  L  S  ++G++ GPL  F G  N F
Sbjct: 86  ISSYNCRNSGMSANVNALQQSHQSQGMMQGPLAGFGGLLNNF 127


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 455 PTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGP 583
           PT    VALFDN H+    PE+   N       +++  LA  P
Sbjct: 327 PTRSKSVALFDNKHQMSSIPEYSMLNTNLANLEHLDLELANSP 369


>U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK1127.10 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 473 VALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLIT-FLVNKGI 622
           +  + N H +V+    +T N+E +Q  +    LA G + S    FLVN+G+
Sbjct: 201 ITKYINGHSDVVMGAVITDNDEFQQHLFFMQ-LAVGAVPSPFDCFLVNRGL 250


>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 308 RVSEEMFNADINNAFNYIQVNLQGKTTP 391
           RVS+E+   DI+N +N++Q + Q K  P
Sbjct: 58  RVSKELSFEDIHNEYNFMQFSEQLKAMP 85


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +2

Query: 407 EAQSNLLNVPENVWS--GPTIRPFV-ALFDNYHKNVIRPEFVTPNEE---TEQTTYINTI 568
           EA         ++W   GP    +V   FD ++   ++P+  +P EE   +  TT +NT 
Sbjct: 573 EAMEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTGAVKPQIFSPKEERPLSGCTTPMNTS 632

Query: 569 LATGPIRSLITFLVN 613
            +T  ++S  +  +N
Sbjct: 633 TSTNLVKSKSSESIN 647


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 251  SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQ 364
            +Y+D+LR  ++   DD+ L    +   A+++NA   +Q
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQ 1605


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 251  SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQ 364
            +Y+D+LR  ++   DD+ L    +   A+++NA   +Q
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQ 1605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,453
Number of Sequences: 27780
Number of extensions: 286116
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)