Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d04r
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   151   4e-38
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   149   2e-37
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    31   0.064
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    26   3.2  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   4.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.6  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   5.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   5.6  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   5.6  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   5.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   7.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   9.7  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    24   9.7  
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    24   9.7  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  151 bits (367), Expect = 4e-38
 Identities = 68/117 (58%), Positives = 91/117 (77%)
 Frame = -3

Query: 351 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 172
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 171 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 1
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A+
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAK 122


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  149 bits (362), Expect = 2e-37
 Identities = 68/117 (58%), Positives = 90/117 (76%)
 Frame = -3

Query: 351 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 172
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 171 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 1
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A+
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAK 122


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 31.5 bits (68), Expect = 0.064
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +1

Query: 136 FNIVN*DLTESIWEHMTGLLVGTVTNVGHQVLTLEPPADSVVNTSRF-TPIPLKFV--IA 306
           F+I + D+ ++   H+ G+   T    G + +T     DS +    + TP+P+KFV  IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438

Query: 307 IRLMPDKSLRP 339
           +  MP  +LRP
Sbjct: 439 MHSMPRVALRP 449


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 10  RIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 105
           R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 148 RLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 400 SKRNIQDGYKTCLQADNRQKEDEEIYQASIG 308
           SKR+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 67  SKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 238 QGSILDAQHWLRFQQEDPSYAPKWIP*GPSS 146
           +G  + A+ +LRFQQ+   +  +W+   P S
Sbjct: 175 KGKRMKAKPFLRFQQKYQQFTHRWLEFAPQS 205


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 66  SSKRHHERSLRSTSCFASSRFPAL*H 143
           +S   HER +R    + S+RFP L H
Sbjct: 446 TSNTMHERHIRLLVSYLSNRFPILLH 471


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 391 NIQDGYKTCLQADNRQKEDEEIYQASIGS 305
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 327 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 202
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 312 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 136
           + R D++  N  RK  G+  +    F    L  NIGYG+ K +   +    +K  +H++ 
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562

Query: 135 E 133
           E
Sbjct: 563 E 563


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 391 NIQDGYKTCLQADNRQKEDEEIYQASIGS 305
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/57 (17%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 171 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAA 7
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSA 651


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 360 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 211
           R T VK+R K  I+  S+    +     KP G   R R+  K  Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 99  CAEIAHGVSSKKRKLIVERAQQLSIRVTN 13
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 229 LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDC--RPVN 366
           L + P    ++ T+RF P+PL   ++ ++    SL P +  C   P+N
Sbjct: 569 LKVPPLVPLLIGTTRFFPVPL---VSSQIAIISSLGPSYSGCFQGPIN 613


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 338 LFLTIVGL*TGLIAILYVSFRNATVNHAVTRPHEKGKEID 457
           + LT +G+   L  ++  SFRN+T   +V +P  K KE++
Sbjct: 90  IILTTLGVRLALTPVMIASFRNST-KLSVIQPEMK-KELE 127


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 238

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 325 KSLRPLFDDCRPVNRSYSHLVC 390
           +S++ + DDC P N    +L C
Sbjct: 17  ESVKSVLDDCTPPNVQLEYLTC 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,538
Number of Sequences: 5004
Number of extensions: 35173
Number of successful extensions: 112
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)