Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d04r
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   160   5e-40
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    30   0.93 
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.       27   8.7  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    27   8.7  
AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeri...    27   8.7  
AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying de...    27   8.7  
AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying de...    27   8.7  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  160 bits (388), Expect = 5e-40
 Identities = 71/117 (60%), Positives = 96/117 (82%)
 Frame = -3

Query: 351 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 172
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 171 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 1
           NG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  AR
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNAR 127


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = -3

Query: 363 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 190
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 189 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 16
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 15  NAA 7
             A
Sbjct: 121 FVA 123


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
 Frame = -3

Query: 363 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 190
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 189 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 16
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 231 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 109
           QYLM NI        R   P+GF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
            K07G5.3 protein.
          Length = 1202

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +1

Query: 238  EPPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFF*KRD-- 408
            E P +S+   T R++ +P  +++ +R+  ++ ++  FD+ R       HLV     R+  
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117

Query: 409  SEPRGDTAAREGKR 450
              PRG T +   +R
Sbjct: 1118 ENPRGITESSVEER 1131


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 385 QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 281
           QD  K   + D+RQKE  E Y+  IGS+ +  E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272


>U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 373 YSHLVCFF*KRDSEPRGDTAARE 441
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 396 KETYKMAIRPVYRPTIVKKRTKR-FIRHQSDRYDKLKRNWRKPRGIDNRVRRR 241
           K+ +  A++P +R TI+ +R K   ++   DRY K K+ + K   +    +RR
Sbjct: 387 KKKHMTALKP-WRDTILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRR 438


>AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 373 YSHLVCFF*KRDSEPRGDTAARE 441
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying
           defective protein 30,isoform b protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 373 YSHLVCFF*KRDSEPRGDTAARE 441
           YSHL  +F + D  PR   AARE
Sbjct: 229 YSHLADYFPEYDGPPRDPIAARE 251


>AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying
           defective protein 30,isoform a protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 373 YSHLVCFF*KRDSEPRGDTAARE 441
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,104
Number of Sequences: 27780
Number of extensions: 199198
Number of successful extensions: 601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)