Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03r
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.37 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.37 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.37 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.48 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.48 
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    23   2.6  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.5  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P +S A+ L+   GT      +MF +A S  + V++LNY+H
Sbjct: 255 VFLNLVAETLPQVSDAIPLL---GTY--FNCIMFMVASSVVLTVVVLNYHH 300


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P +S A+ L+   GT      +MF +A S  + V++LNY+H
Sbjct: 255 VFLNLVAETLPQVSDAIPLL---GTY--FNCIMFMVASSVVLTVVVLNYHH 300


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P +S A+ L+   GT      +MF +A S  + V++LNY+H
Sbjct: 255 VFLNLVAETLPQVSDAIPLL---GTY--FNCIMFMVASSVVLTVVVLNYHH 300


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P+ S AV L+   GT      +MF +A S  + V++LNY+H
Sbjct: 255 VFLNLVAEKIPTTSDAVPLI---GTY--FNCIMFMVASSVVLTVVVLNYHH 300


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P+ S AV L+   GT      +MF +A S  + V++LNY+H
Sbjct: 255 VFLNLVAEKIPTTSDAVPLI---GTY--FNCIMFMVASSVVLTVVVLNYHH 300


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 503 PNHEIP*RKKPNTPHSAHHVARVQHIH 423
           P+HEI  +    +  + H   ++QH+H
Sbjct: 105 PHHEIKLQHLHQSKFNPHEEVKLQHLH 131



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 539 LHRFYRGP*ARRPN--HEIP*RKKPNTPHSAHHVARVQHIH 423
           +H+ ++     RPN  HE+       T  + HH  ++QH+H
Sbjct: 81  VHKVFQHLMIHRPNWWHEL------ETKFNPHHEIKLQHLH 115


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 155 PHVFLYIFEKLASNLHNPKGLREVRMSQY 69
           P+V +YIF +    + +P+ LR+V +  +
Sbjct: 65  PYVGIYIFHQPVLLIRSPEILRKVLVKDF 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,211
Number of Sequences: 336
Number of extensions: 3158
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)