Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03r
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    30   1.7  
02_02_0135 + 7096911-7098440                                           29   3.9  
04_04_0442 - 25229186-25229568,25229740-25232671                       28   6.7  

>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 306 TVKVLLLLMFNIAWSCFIIVLILNYNHCL 220
           T+ ++ L +FN   S FI++L+ NY  CL
Sbjct: 705 TLLIVCLTLFNEVTSFFIVILLYNYTICL 733


>02_02_0135 + 7096911-7098440
          Length = 509

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 468 VRFFSLRNFMIRSPRSRPAIKSMQ*LKNNIGCLLGRFTD 584
           V ++   NF +   RSR A  + Q L + +GC+LG   D
Sbjct: 230 VPYYPAANFAVVVARSRYAAVAQQVLNDAVGCVLGGVAD 268


>04_04_0442 - 25229186-25229568,25229740-25232671
          Length = 1104

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 571 VDLRTIALRDNASSGNIRTASYDVTREERLMCHKPTLGPIVPL 699
           ++LRTIAL DN   G I     ++   +RL  ++  L   +PL
Sbjct: 267 INLRTIALYDNNLVGPIPATIGNIQNLQRLYLYRNLLNGTIPL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,599
Number of Sequences: 37544
Number of extensions: 322910
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)