Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03r
         (737 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    26   1.4  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    25   1.8  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   1.8  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.4  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    25   3.2  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    25   3.2  
AF043433-1|AAC05656.1|  231|Anopheles gambiae putative pupal-spe...    24   5.6  

>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P +S A+ L+   GT      +MF +A S  + V++LNY+H
Sbjct: 275 VFLNLVAETLPQVSDAIPLL---GTY--FNCIMFMVASSVVLTVVVLNYHH 320


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P+ S AV L+   GT      +MF +A S    +LILNY+H
Sbjct: 258 VFLNMVAETMPATSDAVPLL---GTY--FNCIMFMVASSVVSTILILNYHH 303


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -3

Query: 378 VALHAHHENCPSLSRAV*LMSVKGTVKVLLLLMFNIAWSCFIIVLILNYNH 226
           V L+   E  P+ S AV L+   GT      +MF +A S    +LILNY+H
Sbjct: 290 VFLNMVAETMPATSDAVPLL---GTY--FNCIMFMVASSVVSTILILNYHH 335


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 285 LMFNIAWSCFIIVLILNYNH 226
           +MF +A S  + V++LNY+H
Sbjct: 301 IMFMVASSVVLTVVVLNYHH 320


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 482 RKKPNTPHSAHHVARVQHIHALRLC 408
           R+ P  PH   HVA  QH+ A   C
Sbjct: 159 RRSPGVPH---HVAEPQHLGATHSC 180


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 482 RKKPNTPHSAHHVARVQHIHALRLC 408
           R+ P  PH   HVA  QH+ A   C
Sbjct: 159 RRSPGVPH---HVAEPQHLGATHSC 180


>AF043433-1|AAC05656.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 231

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 324 ARPREREMGSFHDVHAVRRHAARLFTNT 407
           ARP  + +GS H   A+ +H+A     T
Sbjct: 39  ARPAIQHVGSIHAAPAIYQHSAPAIVKT 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,711
Number of Sequences: 2352
Number of extensions: 12969
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)