Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03r
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX641011-1|CAE46010.1|  262|Homo sapiens hypothetical protein pr...    30   10.0 
BC146792-1|AAI46793.1| 2624|Homo sapiens B double prime 1, subun...    30   10.0 
AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.     30   10.0 

>BX641011-1|CAE46010.1|  262|Homo sapiens hypothetical protein
           protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -2

Query: 586 SSVNRPNRQPILFLSYCIDFIAGLERGDRIMKFRNEKNLTPLIP 455
           +S++RP R+P+ FLS  I     LE  D  M+  ++K L PLIP
Sbjct: 173 ASLSRPGRRPLGFLS-LICSKNSLE-SDEPMQVHSKKRLKPLIP 214


>BC146792-1|AAI46793.1| 2624|Homo sapiens B double prime 1, subunit of
            RNA polymerase III transcription initiation factor
            protein.
          Length = 2624

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -2

Query: 586  SSVNRPNRQPILFLSYCIDFIAGLERGDRIMKFRNEKNLTPLIP 455
            +S++RP R+P+ FLS  I     LE  D  M+  ++K L PLIP
Sbjct: 2495 ASLSRPGRRPLGFLS-LICSKNSLE-SDEPMQVHSKKRLKPLIP 2536


>AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.
          Length = 2627

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -2

Query: 586  SSVNRPNRQPILFLSYCIDFIAGLERGDRIMKFRNEKNLTPLIP 455
            +S++RP R+P+ FLS  I     LE  D  M+  ++K L PLIP
Sbjct: 2498 ASLSRPGRRPLGFLS-LICSKNSLE-SDEPMQVHSKKRLKPLIP 2539


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,719,834
Number of Sequences: 237096
Number of extensions: 1694833
Number of successful extensions: 5951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5951
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)