Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03f
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1BBT8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_Q8R776 Cluster: Predicted hydrolases or acyltransferase...    33   4.2  
UniRef50_Q54ED8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_A2FEL9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_UPI0000498BD1 Cluster: hypothetical protein 221.t00013;...    33   7.3  
UniRef50_Q5ENB3 Cluster: Pectate lyase; n=3; Bacteria|Rep: Pecta...    33   7.3  
UniRef50_A0LYD4 Cluster: Protein containing immunoglobulin-like ...    33   7.3  
UniRef50_Q8IJZ6 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_A1BBT8 Cluster: Putative uncharacterized protein; n=1;
           Paracoccus denitrificans PD1222|Rep: Putative
           uncharacterized protein - Paracoccus denitrificans
           (strain Pd 1222)
          Length = 367

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +2

Query: 20  KAQAELVEAEKMLRPNQAVYRETVVSSHET 109
           ++ AELV A+K+LRPN A+YR+    S ET
Sbjct: 196 RSVAELVRADKVLRPNGAIYRDRHPESWET 225


>UniRef50_Q8R776 Cluster: Predicted hydrolases or acyltransferases;
           n=1; Thermoanaerobacter tengcongensis|Rep: Predicted
           hydrolases or acyltransferases - Thermoanaerobacter
           tengcongensis
          Length = 285

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 167 VFNLSNFNTTVVIVFININNDKVC*RANVFYFSESQNKELRYLNWW 304
           +  +SNF+T V  V+INI+        N+FY  E Q K++ +L+ W
Sbjct: 26  IIYISNFSTGVKKVYINIDG------INIFYKKEGQGKKVLFLHGW 65


>UniRef50_Q54ED8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 366

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 155 ILYRVFNLSNFNTTVVIVFININNDKVC*RANVFYFSESQNKELRYLN 298
           ILY++ N +N+N +    F  I+ND V  +  + Y+ E  NK + Y+N
Sbjct: 57  ILYKINNNNNYNNSNNNKFKLIHNDLV--KTIIVYYFEINNKSINYMN 102


>UniRef50_A2FEL9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 435

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 430 NCTLSSASTIHEPFIKGRAFRAGDQNSIYKYNLRNVFF 543
           +C ++  +  H+PFI+   FR G+Q    KYN  N+FF
Sbjct: 42  SCVITEINFSHQPFIE---FRFGEQKHETKYNEYNIFF 76


>UniRef50_UPI0000498BD1 Cluster: hypothetical protein 221.t00013;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 221.t00013 - Entamoeba histolytica HM-1:IMSS
          Length = 177

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 152 YILYRVFNLSNFNTTVVIVFININNDKVC*RANVFYFSESQNKELRYLNW 301
           Y LY  + L N  TT+   F+   ND++C   NV   S ++NK +RYL W
Sbjct: 67  YCLYYGWLLINSPTTLSFAFLF--NDRICYIQNVCELSLTKNK-IRYLQW 113


>UniRef50_Q5ENB3 Cluster: Pectate lyase; n=3; Bacteria|Rep: Pectate
           lyase - uncultured bacterium
          Length = 471

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 376 GLIVVGEPKGGIRGFRGKNCTLSSASTIHEPFIKGRAFRAGDQNSIYKYNL 528
           G+ V  E  GG+R     NC L S +  H   +K  A R G   +++  N+
Sbjct: 325 GITVGSEISGGVRNLFASNCRLDSPNLDHALRVKNNAMRGGLLENLHFRNI 375


>UniRef50_A0LYD4 Cluster: Protein containing immunoglobulin-like
           domain; n=1; Gramella forsetii KT0803|Rep: Protein
           containing immunoglobulin-like domain - Gramella
           forsetii (strain KT0803)
          Length = 3358

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 398 GSPTTISPSED*TLSYNIK-NTFCIYKNIKIKATNLN 291
           GSP T++P+   T+++N+   T C   NIK+ ATN N
Sbjct: 106 GSPITVNPTRTPTVNFNVPAGTLCT-GNIKLTATNTN 141


>UniRef50_Q8IJZ6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1190

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = -1

Query: 362 TLSYNIKNTFCIYKNIKIKATNLNILVPYFDSH*NKKRWHVNRPCH 225
           +L+   K   CI+ N K + TNL+IL  Y +++ NKK  H+N+  H
Sbjct: 158 SLTNTTKPYLCIHTN-KNQLTNLSILFNY-NNYKNKKSLHINKSIH 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,413,392
Number of Sequences: 1657284
Number of extensions: 10167795
Number of successful extensions: 21113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21108
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)