Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03f
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.3  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 425 PRNPRIPPLGSPTTISPS 372
           P  P+IPP   PTT S S
Sbjct: 209 PTVPKIPPAEFPTTSSSS 226


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 425 PRNPRIPPLGSPTTISPS 372
           P  P+IPP   PTT S S
Sbjct: 209 PTVPKIPPAEFPTTSSSS 226


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 479 PFMKGSCMVEALDRVQFFPRNPRI 408
           PF    C VE  D+V FF    R+
Sbjct: 498 PFTCNMCGVECSDKVSFFLHIARV 521


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 YRVFNLSNFNTTVVIVFININNDKVC*R 244
           Y+V    N N T ++ ++ +N D  C R
Sbjct: 19  YKVMYNGNNNVTDLVEYVLLNEDNPCAR 46


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 415 GFRGKNCTLSSASTIHEPFIKGRAFRAGD 501
           GF GKNC  S       P   G   R  D
Sbjct: 367 GFYGKNCEFSGYDCDSNPCQNGGVCRISD 395


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 416 PRIPPLGSPTTISPS 372
           P+IPP   PTT S S
Sbjct: 1   PKIPPAEFPTTSSSS 15


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 416 PRIPPLGSPTTISPS 372
           P+IPP   PTT S S
Sbjct: 1   PKIPPAEFPTTSSSS 15


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 604 YSFRLF*TKRIHTLKYYRETKKKHFLNCIYKYY 506
           Y+F +F    +  L  Y       FL CIY +Y
Sbjct: 118 YAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFY 150


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 410 IPPLGSPTTISPS 372
           +PP+ +PT I+PS
Sbjct: 185 LPPIFAPTMINPS 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,849
Number of Sequences: 336
Number of extensions: 2682
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)