Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0535 + 34571718-34571918,34572341-34572502,34572904-345729...    28   5.2  
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154...    28   6.9  

>03_06_0535 +
           34571718-34571918,34572341-34572502,34572904-34572945,
           34573097-34573246
          Length = 184

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +1

Query: 427 KNCTLSSASTIHEPFIKGRAFRAGDQ-----NSIYKYNL 528
           K+CTL SAST+H+   K   + AG       +S YK N+
Sbjct: 95  KSCTLVSASTMHKSLSKDLEYSAGPTVYMVLSSTYKLNV 133


>02_05_0863 +
           32313890-32314132,32314227-32314517,32315157-32315493,
           32315944-32316278,32316763-32317010,32317296-32317881,
           32317970-32318083,32318165-32318287,32318325-32318531
          Length = 827

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 514 KYYSDRLP*MHDPL*KVHVW*RHLIGCNFSPEIPES 407
           K Y+  +P   +   + + W +HL G +F PE+P S
Sbjct: 405 KLYAGEVPNFSEKDSRPYKWAQHLAGIDFLPEVPLS 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,391
Number of Sequences: 37544
Number of extensions: 253428
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)