Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03f
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)                 30   1.3  
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)                    28   7.1  

>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
          Length = 505

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 62  PNQAVYRETVVSSHET*YRVPVIVLPDIT*YILYRVFNLSNFNTTVVIVFININND 229
           PN+    +TV++   T    PV+   +   Y L+  F ++  NT  V+ F+N   D
Sbjct: 342 PNEYFLTDTVLTFFNTRLNTPVLTFVNTRLYTLFLTFVITRLNTP-VLTFVNTRLD 396


>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
          Length = 610

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 11  ERSKAQAELVEAEKMLRPNQAVYRETVVSSHET*YRV 121
           +++K Q EL+E +K L    A +RE+ ++  +  Y++
Sbjct: 302 KKAKLQQELIETKKKLEAQTAAHRESELALRKRKYKI 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,453,249
Number of Sequences: 59808
Number of extensions: 324548
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)