Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03f
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 398 GSPTTISPSED*TLSYNIKNTFCIYKNIKIKATN 297
           G P  I  + + T+  N   TFC +KN KI  TN
Sbjct: 283 GCPAIIYLTMNDTIRKNFFRTFCRFKNTKIDTTN 316


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical protein
            F20B10.1 protein.
          Length = 1180

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 467  GSCMVEALDRVQFFPRNPRIPPLGSPTTISPSED 366
            G+C +EA+ R Q +  NP+ P L S T  + +ED
Sbjct: 1060 GTCPIEAVSRQQMYDFNPQ-PDLISSTIKTSTED 1092


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,007
Number of Sequences: 27780
Number of extensions: 251430
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)