Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d03f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   7.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 329 IYKNIKIKATNLNILVPYFD 270
           IY N+KI++  ++ L+ YF+
Sbjct: 445 IYPNLKIESFTVDKLITYFE 464


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 329 IYKNIKIKATNLNILVPYFD 270
           IY N+KI++  ++ L+ YF+
Sbjct: 445 IYPNLKIESFTVDKLITYFE 464


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 473 MKGSCMVEALDRV 435
           ++G C++EALD +
Sbjct: 150 VEGKCLIEALDAI 162


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 473 MKGSCMVEALDRV 435
           ++G C++EALD +
Sbjct: 166 VEGKCLIEALDAI 178


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 29  AELVEAEKMLRPNQAVYRETVVSSHET*YRVPVIVL 136
           AE    + + +P   V+RET+ S+    +RV  I L
Sbjct: 386 AEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKL 421


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 29  AELVEAEKMLRPNQAVYRETVVSSHET*YRVPVIVL 136
           AE    + + +P   V+RET+ S+    +RV  I L
Sbjct: 301 AEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKL 336


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 29  AELVEAEKMLRPNQAVYRETVVSSHET*YRVPVIVL 136
           AE    + + +P   V+RET+ S+    +RV  I L
Sbjct: 620 AEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKL 655


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 473 MKGSCMVEALDRV 435
           ++G C++EALD +
Sbjct: 223 VEGKCLIEALDAI 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,388
Number of Sequences: 438
Number of extensions: 2927
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)