Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d02r
         (783 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    66   9e-13
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    25   2.6  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    25   2.6  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    24   4.6  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    24   6.1  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 66.5 bits (155), Expect = 9e-13
 Identities = 28/60 (46%), Positives = 36/60 (60%)
 Frame = -1

Query: 747 LQGHIRTHTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKH 568
           L+ HIRTHTGEKPF C HC  A  D+  L  H++ H+  K YSC  C   F++ + L  H
Sbjct: 227 LKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHTGEKPYSCDVCFARFTQSNSLKAH 286



 Score = 59.3 bits (137), Expect = 1e-10
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = -1

Query: 738 HIRTHTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKHL 565
           H +TH GEK + C +C  A     +L +HL  H+D K Y C  C +TF +  LL +H+
Sbjct: 345 HAKTHEGEKCYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQCAQTFRQKQLLKRHM 402



 Score = 52.0 bits (119), Expect = 2e-08
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 747 LQGHIRTHTGEKPFSCHHCRRAFADRSNLRAHLQ-THSDVKKYSCSGCGKTFSRMSLLSK 571
           LQ H+ THTG KP  C HC   F     L  H++  H+  + + C+ C      +S L +
Sbjct: 170 LQNHVNTHTGTKPHRCKHCDNCFTTSGELIRHIRYRHTHERPHKCTECDYASVELSKLKR 229

Query: 570 HLEGGCG 550
           H+    G
Sbjct: 230 HIRTHTG 236



 Score = 51.2 bits (117), Expect = 4e-08
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -1

Query: 747 LQGHIRTHTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKH 568
           L  H++TH+ ++P  C  C R F   ++L+ H+ TH+  K + C  C   F+    L +H
Sbjct: 142 LSRHLKTHSEDRPHKCVVCERGFKTLASLQNHVNTHTGTKPHRCKHCDNCFTTSGELIRH 201

Query: 567 L 565
           +
Sbjct: 202 I 202



 Score = 48.8 bits (111), Expect = 2e-07
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 747 LQGHIRTHTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKK--YSCSGCGKTFSRMSLLS 574
           L  H+R HTGEKP+SC  C   F   ++L+AH   H    K  + C  C  T  R + L 
Sbjct: 255 LTRHMRIHTGEKPYSCDVCFARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTTCGRKTDLR 314

Query: 573 KHLE 562
            H++
Sbjct: 315 IHVQ 318



 Score = 47.2 bits (107), Expect = 6e-07
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 747 LQGHIRT-HTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSK 571
           L+ H++  HT +KP  C  C   F DR + + H +TH   K Y C  C      M  L  
Sbjct: 313 LRIHVQNLHTADKPIKCKRCDSTFPDRYSYKMHAKTHEGEKCYRCEYCPYASISMRHLES 372

Query: 570 HL 565
           HL
Sbjct: 373 HL 374



 Score = 44.0 bits (99), Expect = 5e-06
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 738 HIR-THTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKHL 565
           HIR  HT E+P  C  C  A  + S L+ H++TH+  K + C  C         L++H+
Sbjct: 201 HIRYRHTHERPHKCTECDYASVELSKLKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHM 259



 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
 Frame = -1

Query: 747 LQGHIRTHTGEKPFSCHHCRRAFADRSNLRAHLQTHSD---------VKKYSCSGCGKTF 595
           L+ H+  HT +KP+ C  C + F  +  L+ H+  + +          K + C  C + F
Sbjct: 370 LESHLLLHTDQKPYKCDQCAQTFRQKQLLKRHMNYYHNPDYVAPTPKAKTHICPTCKRPF 429

Query: 594 SRMSLLSKHL 565
                L +H+
Sbjct: 430 RHKGNLIRHM 439



 Score = 33.9 bits (74), Expect = 0.006
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 708 FSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKHLEGGCG 550
           + C++C         L  HL+THS+ + + C  C + F  ++ L  H+    G
Sbjct: 127 YMCNYCNYTSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTLASLQNHVNTHTG 179



 Score = 27.1 bits (57), Expect = 0.65
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 678 ADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKHLE 562
           A ++  R      S    Y C+ C  T +++ LLS+HL+
Sbjct: 109 AKKTQTRGKRTQQSTGSTYMCNYCNYTSNKLFLLSRHLK 147


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 735 IRTHTGEKPFSCHHCRRAFAD 673
           I +   E PF C+ CR +F D
Sbjct: 236 IHSDDEELPFKCYVCRESFVD 256


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 735 IRTHTGEKPFSCHHCRRAFAD 673
           I +   E PF C+ CR +F D
Sbjct: 236 IHSDDEELPFKCYVCRESFVD 256


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 340 HTYP*KYEHFVLIHYGEPITCVINVLQYLRSEIHSVL 450
           H  P    H+V ++  +P    +NV Q ++  I+ V+
Sbjct: 180 HPVPIAVPHYVKVYIPQPYPLQVNVEQPIKIPIYKVI 216


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 747 LQGHIRTHTGEKPFSCHHCRRAFADRSNLRAH 652
           ++ H   H   + F C  CR  +    NLR H
Sbjct: 512 IRNHYHVHFPGR-FECPLCRATYTRSDNLRTH 542


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,037
Number of Sequences: 2352
Number of extensions: 16720
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)