Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d02f
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   1.6  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   3.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   3.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.0  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 382 PENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPD 510
           P ++++K   LS      S +S PV++++  V+P+  + ++ D
Sbjct: 203 PTSVASKKATLSSVSKVASTSSLPVTSVSASVDPKSAASKVQD 245


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 174 VFVYLVKNACRGLSKSFSAGEEL 242
           VF+ L  + C+GL+ S+S G +L
Sbjct: 136 VFIPLTASTCKGLNGSWSGGHDL 158


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 559 ARPTPQYPYMPTLYSPYA 612
           +R TPQ PYM   Y P+A
Sbjct: 521 SRMTPQSPYMQNYYRPHA 538


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/69 (20%), Positives = 28/69 (40%)
 Frame = +1

Query: 403 PEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPTPQYP 582
           P D+     Y S  +SPV +   K+  R+    + DY    ++   P+ + +   +    
Sbjct: 245 PGDIKYATGYESTVASPVPSRVAKLSSRDTPSIIADYDEFRKSESSPSRSSVLSTSKPEV 304

Query: 583 YMPTLYSPY 609
           +    Y P+
Sbjct: 305 HETEGYCPH 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,711
Number of Sequences: 5004
Number of extensions: 41539
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)