Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d02f
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459... 34 0.10
05_03_0039 - 7621613-7622695 29 2.2
10_01_0316 + 3479574-3482679,3482766-3483127 29 3.0
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 29 3.9
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572... 28 5.2
05_05_0207 + 23272777-23272977,23273831-23275330 28 5.2
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 6.8
07_03_1161 - 24434449-24434790 28 6.8
11_06_0610 - 25449085-25453284 27 9.0
10_04_0007 + 7439378-7439677,7439873-7440308,7440483-7440593,744... 27 9.0
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 27 9.0
>06_02_0211 -
13043968-13044646,13044752-13045037,13045903-13045979,
13046039-13046139,13046348-13046412,13048296-13048581
Length = 497
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 346 YYDYHCDMENE-EPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSA 522
Y + ++E E EPE+ + D + P A +P+S++ VK PRE Y A
Sbjct: 23 YSPHRSELEPEPEPESETDADADAALQPPPPPPARAPLSSLVVKPSPREGDGASSSYPDA 82
Query: 523 CRTRLEPAPTELA 561
+PT A
Sbjct: 83 AAAAARSSPTPAA 95
>05_03_0039 - 7621613-7622695
Length = 360
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = +1
Query: 376 EEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTE 555
E+P L KP+ K +P S P K EP+ + P+ + +P P
Sbjct: 51 EKPPELEPKPKPKPKP--HPKHESKPEPKPEPKPEPKPYPEPKPETKPELKPEPKPNPEP 108
Query: 556 LARPTPQYPYMPTLY 600
P P+ P Y
Sbjct: 109 KPEPKPEPKPEPKPY 123
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 415 SKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRL 537
S +G PS+ S+ +S V + E S QLPD TRL
Sbjct: 733 SLSGPIPSQLSNMISLSVVNISFNELSGQLPDGWDKIATRL 773
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Frame = +1
Query: 358 HCDMENEEP---ENLSTKPE----DLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYM 516
H M N +P E S +PE ++ + S P T+K+ E++ L YM
Sbjct: 1654 HHGMNNRQPIIEEPASPEPEHETEEMKECAIEDSFVDDPEEIPTIKLNFEEFTQNLKSYM 1713
Query: 517 SACRTRLEPAPTE--LARPTPQYPYMPT 594
A +E A L TP+ +PT
Sbjct: 1714 QANNIEIEDADMSKALVAITPEVASIPT 1741
>11_05_0063 -
18756289-18756390,18756769-18756954,18757053-18757223,
18757339-18757383,18758087-18758260,18758801-18758887,
18759349-18759510,18759945-18760015,18760296-18760435,
18760828-18760952,18761329-18761463,18762069-18762314,
18762530-18762755,18763039-18763091
Length = 640
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = +1
Query: 334 ATRLYYDYHCDMENEEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDY 513
A R+ Y Y+ E + P NLS K D S K V M V + + Y
Sbjct: 9 AARMLYRYNLPHEKQRPRNLS-KLNDPSTWEKRRLKGKLAVQKMVVNL--------MELY 59
Query: 514 MSACRTRLEPAPTELARP--TPQYPYMPT 594
+ R + P P + T ++PY PT
Sbjct: 60 LQRMRQKRPPYPKPVGMDQFTAEFPYEPT 88
>05_05_0207 + 23272777-23272977,23273831-23275330
Length = 566
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 111 NTEKSKHRKVAPNY*RRIRVRNATSAHVHSTT 16
N+EK KHRK+A + I AT H S T
Sbjct: 244 NSEKEKHRKIADDSKNEIGELTATIEHTKSRT 275
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 481 PREWSHQLPDYMSACRTRLEPAPTELARPTPQYPYMPTLYSPY 609
P E+S + P Y+ + + P P P+Y P +Y+PY
Sbjct: 682 PPEYSPEPPSYVPS-PPQYAPQPPSYVPSPPEYAPEPPVYAPY 723
>07_03_1161 - 24434449-24434790
Length = 113
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +1
Query: 367 MENEEPENLSTKPEDLSKTG-NYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEP 543
+E EEP + + E+ + N+P+ + ++ P +LP + L P
Sbjct: 28 LEEEEPSSTTAPAEEEDQEEPNHPAAVFPELPVPEHELPPLPKVVELPPFFP--EAHLPP 85
Query: 544 APTELARPTPQYPYMPTLYSPYAXE 618
P P P++P +P + P E
Sbjct: 86 FPEVDLPPKPEFPGVPEFHFPAEPE 110
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/72 (30%), Positives = 26/72 (36%)
Frame = +1
Query: 382 PENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTELA 561
PE + P T P K+SSP V P E S P P P E +
Sbjct: 818 PEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVS----SPPPPEKS 873
Query: 562 RPTPQYPYMPTL 597
P P+ PTL
Sbjct: 874 PPPPETKSPPTL 885
>10_04_0007 +
7439378-7439677,7439873-7440308,7440483-7440593,
7440633-7440762,7440798-7441512
Length = 563
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 523 CRTRLEPAPTELARPTPQYPYMPTLYSPYA 612
C TRL P P +P P+ P+ + YA
Sbjct: 312 CDTRLLPFPQRSRKPNPEDPHQRAIVGRYA 341
>01_01_0484 -
3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 478 EPREWSHQLPDYMSACR 528
EP W+HQ+ +Y+SA R
Sbjct: 467 EPNYWTHQINEYLSALR 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,965
Number of Sequences: 37544
Number of extensions: 264591
Number of successful extensions: 918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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