Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d02f
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 30 1.3
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 30 1.3
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_27579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 28 7.0
SB_38078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 27 9.2
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.2
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Frame = +1
Query: 370 ENEEPENLSTKPEDLSKTG--NYPSK--ASSPVSAMTVKVEPREWSHQLPDYMSACRTRL 537
E EE E + +P T P++ P + +VEP E P A T +
Sbjct: 318 EEEEEERPTPRPTKAKPTAIIRKPTERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTI 377
Query: 538 EPAPTELARPTPQYPYMPTLYS 603
+ PTE P P +P + S
Sbjct: 378 KRRPTERPTKKPTKPLLPEVES 399
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 364 DMENEEPENLSTKPEDLSKTGNY-PSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLE 540
+ E + P KP + + P+K P + +VEP E P A T ++
Sbjct: 158 EKERQTPTPTKAKPTTIKRRPTERPTK--KPTKPLLPEVEPEEEERATPRPTKAKPTTMK 215
Query: 541 PAPTELARPTPQYPYMP 591
PTE P P +P
Sbjct: 216 RRPTERPTKKPTKPLLP 232
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Frame = +1
Query: 364 DMENEEPENLSTKPEDLSKTG--NYPSK--ASSPVSAMTVKVEPREWSHQLPDYMSACRT 531
++E EE E + +P T P++ P + +VEP E P A T
Sbjct: 193 EVEPEEEERATPRPTKAKPTTMKRRPTERPTKKPTKPLLPEVEPEEEEKATPRPTKAKPT 252
Query: 532 RLEPAPTELARPTPQYPYMP 591
++ PTE P P +P
Sbjct: 253 TIKRRPTERPTKKPTKPLLP 272
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 361 CDMENEEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLE 540
CD + P + E SK G + + +PVS + E R + P YMS+ T +E
Sbjct: 737 CDPQGFPPSSRGPGHEVHSKYGRHLTGIGNPVSPHSRMTEKRSSDYSNPVYMSSEMTSME 796
Query: 541 PA---PTELARPTPQY 579
+ P ++ P Y
Sbjct: 797 MSALPPVQVFEPAMWY 812
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +1
Query: 355 YHCD-MENEEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRT 531
YH ++P + +S +PS ++S + A + V +W P M+ T
Sbjct: 700 YHAQGATQQQPPPQQQQASSMSAPTQWPSLSTSALQASSAAVAYSQWQQPAP-LMNQSMT 758
Query: 532 RLEPAPTELARPTPQYPYMPTLYSPYAXE 618
++ P L PY + YA +
Sbjct: 759 QIAQQPVPLMGQATNQPYPGYTPAQYAYQ 787
>SB_27579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -2
Query: 513 IVGQLVRPFSWFNLNRHR*NWRRSFARIVSCLGQVFGLSAKILRFFIFHVTMIIIIK 343
+V +++R F F L+RH +R + I++C+ + L + F I +M+ I+
Sbjct: 305 VVLRVLRIFRVFKLSRHSKRLQRFGSAIITCIKDMTSLMFVLFIFIILFSSMMYFIE 361
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 106 GKVQTSQSCTELLKTYSCS 50
GK Q +Q+CT ++ YSCS
Sbjct: 674 GKHQCAQNCTNIIGNYSCS 692
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 370 ENEEPENLSTKPEDLSKTGNYPSKASSP-VSAMTVKVEPREWSHQLPD 510
+N+ PE +P + G+Y K SP V+ T +VE ++ S + D
Sbjct: 408 KNQSPEKGMEEPVKSDQEGSYQDKQDSPDVNRETEEVEKKDQSSEKSD 455
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 364 DMENEEPENLSTKPEDLSKTGNYPSKASSPVSAMT 468
D+ E STKPE+ GN+ S+ +S++T
Sbjct: 44 DIGQREKPRESTKPEEKPSGGNHTSQEKGKISSLT 78
>SB_38078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 385 ENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLP 507
+NL K +D+SKT N + SP + ++ P WS P
Sbjct: 22 DNLCKKSQDISKTSN----SCSPGDPLVLERPPPRWSSNSP 58
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 364 DMENEE-PENLSTKPEDLSKTGNYPSKASSPVS 459
+MENEE EN+ ED+ + N P + PV+
Sbjct: 57 EMENEEVDENMEEGGEDIEEDTNEPKEEQQPVT 89
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 211 SQNRSVLAKNYAHCPLKKRPVLVREERXXXXXXXXXXXXXLATRLYYDYHCDMENEEPEN 390
SQ+ SV KN A K+ + + E +A R Y D +++E
Sbjct: 1345 SQSTSVEGKNQAEVDALKKSLEEKTEEMNEKIKTLNQVKRIARR--YKTQFDEQSKEFNE 1402
Query: 391 LSTKPEDLSKTGNYPSK-ASSP 453
+ K EDL K PS+ AS+P
Sbjct: 1403 VKKKLEDLRKAPPPPSQPASAP 1424
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 LSTKPEDLSKTGNYPSKASSPVSAMTVKVEPR--EWSHQLPDYMSACRTRLEPAPTELAR 564
L T EDL +T Y + SP+ A+ ++ + DY S L + T+ R
Sbjct: 1219 LRTLDEDLGQTHKYIIHSQSPIGALELRETNKLHVADSSKIDYESVPYIHLTISTTDNGR 1278
Query: 565 PTP 573
PTP
Sbjct: 1279 PTP 1281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,531,830
Number of Sequences: 59808
Number of extensions: 328089
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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