Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d02f
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 34 0.071
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 34 0.093
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z70270-7|CAH04652.1| 175|Caenorhabditis elegans Hypothetical pr... 28 4.6
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 28 6.1
AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine r... 28 6.1
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 27 8.1
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 27 8.1
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 34.3 bits (75), Expect = 0.071
Identities = 25/87 (28%), Positives = 33/87 (37%)
Frame = +1
Query: 343 LYYDYHCDMENEEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSA 522
L Y Y + EN + N +T T + S SSP + + QL A
Sbjct: 13 LAYFYFKNSENGK--NATTSQRSSRSTRSTKSSRSSPKTVPVTEQPAAAPPQQLEQPTPA 70
Query: 523 CRTRLEPAPTELARPTPQYPYMPTLYS 603
PAP + PTP+ P PT S
Sbjct: 71 PAPESAPAPVQCPEPTPEVPQQPTQVS 97
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 33.9 bits (74), Expect = 0.093
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 406 EDLSKTGNYPSKASSPVSA----MTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPTP 573
+D+ G YP + +PVS+ ++VK EPR H Y + T+ E + T A P P
Sbjct: 1484 DDIQFEGVYPIEPCAPVSSGMPILSVKTEPRSTEHLSFSYENVAYTQAEFSSTTYACPEP 1543
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 33.9 bits (74), Expect = 0.093
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 406 EDLSKTGNYPSKASSPVSA----MTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPTP 573
+D+ G YP + +PVS+ ++VK EPR H Y + T+ E + T A P P
Sbjct: 1484 DDIQFEGVYPIEPCAPVSSGMPILSVKTEPRSTEHLSFSYENVAYTQAEFSSTTYACPEP 1543
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 33.9 bits (74), Expect = 0.093
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 394 STKP-EDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPT 570
STKP E+ + T PS + PV+ KV P E + + T L P PT PT
Sbjct: 769 STKPAEETTTTTEAPSTTTKPVTVAVKKVSPEEMEKLVKKESTEKVTLLPPLPT-FTFPT 827
Query: 571 --P-QYPYMPTL 597
P +P +PTL
Sbjct: 828 LAPFTFPTLPTL 839
>Z70270-7|CAH04652.1| 175|Caenorhabditis elegans Hypothetical
protein C53D6.10 protein.
Length = 175
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 406 EDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPT 570
EDL G P+ + + A P + +P + +A T P PT LA PT
Sbjct: 7 EDLVPPGG-PTPEKAAIPAFPESNAPSQPEINIPQFPNAQGTGAPPPPTPLANPT 60
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 376 EEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVE 480
E+PE KPE +++T PSKAS +A+ V VE
Sbjct: 141 EKPE---PKPEPITETEASPSKASEKDAAVEVSVE 172
>AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine
receptor, class h protein92 protein.
Length = 348
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 433 DSFLS-WTGLRA*C*DSQVLHFPCH 362
DSFLS W GL C Q++ PCH
Sbjct: 20 DSFLSSWKGLVVVCFSIQLVSIPCH 44
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 394 STKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPTP 573
++ P+ LS++ PSK S+ V ++ +L SA T PAPT PTP
Sbjct: 375 TSSPKTLSESIFSPSK-SAAVEGSIATTRRLQFEEKLKKSSSANVTA-PPAPTSAPVPTP 432
Query: 574 QY--PYMPTL 597
++ P PT+
Sbjct: 433 RHVAPLAPTV 442
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 98 PNIAKLHRIIKDVFVFGTRLAHTCTQQRPELE 3
PNI +++ I+KD+ FG ++A + Q LE
Sbjct: 130 PNIDEVYEIVKDMKTFGVKIASSEIQSSHLLE 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,987
Number of Sequences: 27780
Number of extensions: 240671
Number of successful extensions: 747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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