Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d02f
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     29   0.036
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +1

Query: 343 LYYDYHCDMENEEP-ENLSTKPEDLSKTGNYPS----KASSPVSAMTVKVEPREWSHQLP 507
           + Y Y+ ++   EP E +S     +   G++PS      +SP S  T++    + S   P
Sbjct: 362 MLYQYNFNIIISEPTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVS---P 418

Query: 508 DYMSACRTRLEPAPTELARPTPQYP 582
           D  S    RL       ++P+PQYP
Sbjct: 419 DRTSPMEYRLYNPALIQSQPSPQYP 443


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 346 YYDYHCDMENEEPENLSTKPEDLSKTGNYP 435
           Y DY  D +N+E    + +  +  +T NYP
Sbjct: 44  YLDY--DFDNDERRQAAIQSGEYDRTKNYP 71


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 195 NACRGLSKSFSAGEE 239
           N C+ ++ S SAGEE
Sbjct: 593 NTCKVIASSVSAGEE 607


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 346 YYDYHCDMENEEPENLSTK 402
           YY YH   + +  E+L+ K
Sbjct: 389 YYPYHPSTQEDSEEHLTPK 407


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 346 YYDYHCDMENEEPENLSTK 402
           YY YH   + +  E+L+ K
Sbjct: 389 YYPYHPSTQEDSEEHLTPK 407


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 367 MENEEPENLSTKPEDLSKTGNY 432
           M  E  ENL   PE + +T NY
Sbjct: 335 MPMELIENLRNHPEYIDETRNY 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,472
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)