Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d01f
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 194 3e-50
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 194 4e-50
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 178 2e-45
01_06_0579 + 30379243-30379617 29 2.0
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.7
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 3.5
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 4.7
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 4.7
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.2
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 8.2
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 194 bits (474), Expect = 3e-50
Identities = 102/190 (53%), Positives = 131/190 (68%), Gaps = 9/190 (4%)
Frame = +1
Query: 25 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 201
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 202 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 363
P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 364 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH- 540
+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Query: 541 -EKARPSRRA 567
EKAR R +
Sbjct: 181 FEKARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 194 bits (473), Expect = 4e-50
Identities = 101/184 (54%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Frame = +1
Query: 25 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 201
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 202 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 381
P+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 382 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARP 555
LTFDQLALRAP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG EKAR
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARG 179
Query: 556 SRRA 567
R +
Sbjct: 180 RRNS 183
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 178 bits (434), Expect = 2e-45
Identities = 101/201 (50%), Positives = 128/201 (63%), Gaps = 20/201 (9%)
Frame = +1
Query: 25 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 201
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 202 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 381
P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 382 ILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSH 510
LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P S+
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSN 178
Query: 511 TKPYVRTKGH--EKARPSRRA 567
TKPYVR+KG EKAR R +
Sbjct: 179 TKPYVRSKGRKFEKARGRRNS 199
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 304 CTVSRHL*LSPLPRQSNPHELASS 233
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 275 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 171
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 142 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 318
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 319 TVAALHVTEKARARILAAGGEI 384
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 372 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 274
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 543 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 364
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 363 NACTSFFG-NMKSSHRHLRY 307
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 386 LLLISWLFVLRLARRQYWYKVSEML 460
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 268 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 408
++G++ DV I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,272,060
Number of Sequences: 37544
Number of extensions: 387516
Number of successful extensions: 1150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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