Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12d01f
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   211   2e-55
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    31   0.78 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    31   0.78 
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.2  
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    27   7.3  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  211 bits (516), Expect = 2e-55
 Identities = 108/184 (58%), Positives = 132/184 (71%), Gaps = 2/184 (1%)
 Frame = +1

Query: 25  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 204
           MGIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 205 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 384
           +S+++LAR ++K   E    V + TVT+D RLY +PK++VAALHVTE ARARILAAGGEI
Sbjct: 61  LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEI 120

Query: 385 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 558
           +T DQLAL++P G+ TV +QG R+AREA +HFGPAPG P SHTKPYVR+KG   E+AR  
Sbjct: 121 ITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFERAR-G 179

Query: 559 RRAN 570
           RRA+
Sbjct: 180 RRAS 183


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 150 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 317
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 150 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 317
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 323 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 490
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 253 GLIAVVVGT-VTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKK 429
           G+ AV  G  +TN +   K  +M  + L +   A   +L   G +   DQ+ L  P  K 
Sbjct: 120 GVAAVTAGPGLTNTITAVKNAQMAESPLLLIGGAAPTLLKGRGALQDIDQMVLFRPLCKY 179

Query: 430 TVLVQGQRNAREAVR 474
              V+  R+    VR
Sbjct: 180 VARVERLRDIVPTVR 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,895
Number of Sequences: 27780
Number of extensions: 322112
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)