Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c24r
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    31   0.17 
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   2.1  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   2.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.5  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.6  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = -3

Query: 478 DISSRM*NCHSSRRRGNVLLFSLAAQCTIVPEFIRNKFRPPPISVFTSRHINTVDPG*SD 299
           D+ +   N  S    G  +  SL  Q  ++P F  N    P +S  +S   NT+    S 
Sbjct: 217 DLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFSSNAKPKPHLSSKSSSQGNTLQRSTSS 276

Query: 298 NRHDNRLIVAAADYSPNPDHARAS 227
               NR +   +D+S +P  +  S
Sbjct: 277 FSTPNRKVSQPSDFSASPSRSIVS 300


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 350 NWWWSKFIPNEFRH 391
           NWWW  F+ N+F +
Sbjct: 175 NWWWPTFVYNDFMY 188


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 561 APGTWLGTPRTFGLVVEKIVCAPREKS 481
           +P  W+ T +   L +E IV + REKS
Sbjct: 412 SPSQWMSTAKDIALTLEAIVSSLREKS 438


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 284 IIVTIVGLPGVHCIYMP*-SEY*NWWWSKFIPNEF 385
           I+VT   +  +  +Y    SE  NWWW  FI   F
Sbjct: 530 ILVTTCIMVSIITVYFQLCSENYNWWWRSFITPGF 564


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 230 QSPHYRGSTVNVTIVIKIKETSYMSFILDTSKRV*IILTYLN 105
           Q  +Y    +   IV KIK+ + + FI+  SK +  ++T +N
Sbjct: 116 QLAYYIKKQIGYGIVRKIKDKNAILFIIANSKGIERVITLIN 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,144
Number of Sequences: 5004
Number of extensions: 56132
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)