Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c24r
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           31   0.73 
07_01_0112 + 837275-837679,838071-838236,839494-839888                 30   2.2  
08_01_0598 + 5257973-5258090,5258253-5258809                           28   6.8  
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228     28   6.8  

>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 26/81 (32%), Positives = 33/81 (40%)
 Frame = +3

Query: 363 LNLFRMNSGTIVHCAAREKSRTFPRLRLEWQFYMRDEMSYFSPAVHILFFLLPGRKFVAY 542
           L +F + S  I      +   T P LR    FY R E     PA      +L   KF+ +
Sbjct: 255 LKVFNLGSNIISGSLPTDIGLTLPNLRYFIAFYNRLEGQI--PASFSNISVL--EKFILH 310

Query: 543 RARFQGRSPGRG*IKNQFNSF 605
           R RF+GR P    I  Q   F
Sbjct: 311 RNRFRGRIPPNSGINGQLTVF 331


>07_01_0112 + 837275-837679,838071-838236,839494-839888
          Length = 321

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 306 NPTIVTIIALSLPPLTTPRILITQEPVTPLSRVHCKCYYSN 184
           +P     +  S PP   PRI +T +PVTP  R     Y+ N
Sbjct: 217 SPRYAAQLQRSCPPNVDPRIAVTMDPVTP--RAFDNQYFKN 255


>08_01_0598 + 5257973-5258090,5258253-5258809
          Length = 224

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -1

Query: 417 SPLLHNVLLCLNSFGINLDHHQFQYSLQGI*IQWTPGNPTIVTIIALSLPPLTTPRILIT 238
           SP+L N   CLN   +N DH  F+ ++     +       +  I  + +P L T  I I 
Sbjct: 38  SPVLVNGFACLNPKDVNADHF-FKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIA 96

Query: 237 QEPVTPLSR 211
           +    PL +
Sbjct: 97  RIDYAPLGQ 105


>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
          Length = 628

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 549 WLGTPRTFGLVVEKIVCAPREKSRTFHPACKIATRAEGE 433
           W G P T   +VE+++  P  +S    P C  A  A GE
Sbjct: 8   WSGRPSTDEEMVEQVLMKPHVRSDDSLPTCADAAFAAGE 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,508
Number of Sequences: 37544
Number of extensions: 360754
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)