Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c24f
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    30   0.22 
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    30   0.22 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   1.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   3.5  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    26   3.5  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    26   4.7  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   4.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.7  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   6.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   8.1  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.1  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.1  

>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 315 RIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSH--AEELHAEISNVDANVKETTEALCIR 488
           R+K  D +I  L +   + ++ ++ + + V SH    +LH +      NV++T      +
Sbjct: 143 RLKSMDSDIHALISMAVRDYLANLLQKMIVESHHRTSQLHTDNYKQVDNVRQTLANFAYK 202

Query: 489 ADELIRARRVELNI 530
             E    RR  LNI
Sbjct: 203 EYESEERRRTVLNI 216


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +3

Query: 246 WGPAFR--SVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAE 419
           W   FR  S+ +    E FV Q   +I++  +E+++   F+YQ FI++   L  +R++ E
Sbjct: 14  WKEIFRTHSIAQTIQLEKFVSQ---QIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLE 70

Query: 420 EL 425
           ++
Sbjct: 71  KV 72


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 556 SSIFSMVAAMFSSTLRALINSSALMHSASVVSLTLASTLDISACNSSA*ERTCSNS 389
           SS  S  ++ FSST  +  +SS+   + S  S T +STL  S+ +SS    + S+S
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHS 400


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 49  VLKNINNNQFQILSSINTLVD*MIINRNLTQLRLN 153
           ++KNI NN+F+ + +++ L+   I   +L  LRL+
Sbjct: 10  IIKNIGNNEFKFVETLHELLPEDITYDDLGSLRLS 44


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 333 YRAALFDHLIVARMLRALHLRKRIGM 256
           +R +  DH +  R LRA+HL K I +
Sbjct: 106 FRGSFGDHHVNPRTLRAMHLNKMISL 131


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 147 PQLC*VSIYYHLI 109
           P LC VS+YYHLI
Sbjct: 477 PNLCAVSLYYHLI 489


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 300 QQLDDRIKQHDKEI--EKLC-NFHYQGFIDSIRELLQVRSHAEELHAEIS 440
           Q LD R K+  + I  E+ C N   Q  +DS +++++ + H   L A IS
Sbjct: 17  QSLDKRYKRIKRLINNEQFCKNVILQKLVDSTKDIIENKVHGNILAATIS 66


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 417 EELHAEISNVDAN---VKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLTT 578
           +++ A ++N  A    +K+T   + I+++  I A     +I A ++K +L + L+TT
Sbjct: 338 DDISASLANKGATAVTIKDTIMVINIQSNRKISAHGFLASIFAILDKYKLAVDLITT 394


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 482 AQCFSSLFDISIYIRYFSMQFFSMRTDLQQFSYR 381
           A CF   F   +Y+  F +Q F  + D   +++R
Sbjct: 129 ALCFFLWFMFGLYVASFIVQIFIAKNDTPNYTFR 162


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 288 RALHLRKRIGMPAPNNHLYLRFPESLHSFSEIILFFFSNSIAIKGIKPQLC*VSIYYHLI 109
           RA  +RK  G       ++    + + SF EI+    +  + +   +P L  +S Y  LI
Sbjct: 289 RAQRIRKETG-----RQVFTAQEKQMLSFKEIVQVNLTRPLTLLLTEPILVCISGYIALI 343

Query: 108 YQRIYG 91
           Y  +YG
Sbjct: 344 YALLYG 349


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -2

Query: 556 SSIFSMVAAMFSSTLRALINSSALMHSASVVSLTLASTLDISACNSSA*ERTCSNS 389
           SSI S  A + S+T+  + ++     ++S   LT +STL  S   SS+  RT S S
Sbjct: 752 SSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTS 807


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  LISCGLIYFSVINVLKNINNNQFQILSSINTLVD 111
           L+ CG I F   N+L   +  +F I+SS+   +D
Sbjct: 213 LVFCGYILFDTYNILHRYSPEEF-IMSSLMLYLD 245


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 198 EIILFFFSNSIAIKGIKPQLC*VSIY 121
           +I LF FSN + +K +   L  +SIY
Sbjct: 126 DICLFIFSNEVLMKRVTIVLATISIY 151


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 526 FSSTLRALINSSALMHSASVVS-LTLASTLDISA 428
           + STL +LIN S   H+  V     L STLD +A
Sbjct: 235 YESTLNSLINKSVKKHNKLVKKHKPLPSTLDYTA 268


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 264  SVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAEISN 443
            ++++ +G EA+  Q+DD   Q    + + C     G  D I+ELL  R  +  L      
Sbjct: 790  NIHDYKGGEAYCLQIDDVYPQCWCNLLEKCISTGDGCSDFIKELLYRRPFSYTLSYVCEQ 849

Query: 444  VDA--NVKETTEALCI 485
            +    N+    + LCI
Sbjct: 850  IPDHWNLNLLADFLCI 865


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 207 NATIQEIEGIDDYWGPAFRSVYE 275
           N  + E+EGI D++  +FR+ Y+
Sbjct: 397 NVALIEMEGIKDFFSVSFRANYD 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,897
Number of Sequences: 5004
Number of extensions: 42511
Number of successful extensions: 137
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)