Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c24f
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0002 - 13986969-13989338 67 1e-11
03_01_0441 + 3418622-3420988 66 3e-11
01_03_0233 + 14042548-14044950 44 7e-05
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 32 0.39
03_04_0105 - 17322276-17322399,17322516-17322740,17323388-173235... 29 2.1
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 29 2.7
07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159 29 3.6
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 27 8.3
02_02_0106 + 6814391-6817007,6817086-6817462 27 8.3
>10_08_0002 - 13986969-13989338
Length = 789
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/105 (31%), Positives = 56/105 (53%)
Frame = +3
Query: 249 GPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELH 428
GP R +E E+ +Q L +K + EIE+LC HY+ FI ++ EL V A+EL
Sbjct: 33 GPIVRHAFESGKPESLLQGLRSIVKMKEVEIEELCRVHYEEFILAVDELRGVLVDADELK 92
Query: 429 AEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCL 563
+S + ++E +L ++ DEL+ V N+ + +++CL
Sbjct: 93 GMLSGENLRLQEVASSLLLKLDELLELYSVNKNVEEALGMLKICL 137
>03_01_0441 + 3418622-3420988
Length = 788
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/109 (28%), Positives = 60/109 (55%)
Frame = +3
Query: 249 GPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELH 428
GP R ++ EA +Q L +K+ + EIE+LC HY+ FI ++ EL V A+EL
Sbjct: 33 GPIIRHGFDSGKPEALMQNLRSIVKKKEVEIEELCRLHYEDFILAVDELRGVLVDADELK 92
Query: 429 AEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLT 575
++ + ++++ + A + DEL ++ NI I +++C+ +++
Sbjct: 93 GMLTGENIHLQKVSSATLLNLDELFELYSIKKNIGEAITTLKICVKVIS 141
>01_03_0233 + 14042548-14044950
Length = 800
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/108 (23%), Positives = 48/108 (44%)
Frame = +3
Query: 249 GPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELH 428
GP R + E + L + + EIE+LC H+ FI ++ +L + + A+ L
Sbjct: 34 GPFVRRAFACGRPEPLLASLRAAARDREAEIEELCRAHFHDFIRAVDDLRSLLADADALK 93
Query: 429 AEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLL 572
+S A + + L + + AR + N+++ + C+ LL
Sbjct: 94 GSLSASHAALLSSAAPLLASLESFLAARGLAGNLSSALASSRRCVRLL 141
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 31.9 bits (69), Expect = 0.39
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Frame = +3
Query: 285 HEAFVQQLDDRIKQHDKEIEKLCNFHYQGFID-SIRELLQVRSHAEELHAEI-------S 440
+E+F+ +L++R KQ + E+E L H F S+ + + + H EE++ ++ +
Sbjct: 596 YESFIHKLEERQKQTEIELENLRKEHNSCFYTVSVLQAQKQKMH-EEMNDQLMRFVEDRT 654
Query: 441 NVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLLT 575
++A KE E + + + +RV N +A +E+++ L LL+
Sbjct: 655 TLEAQNKE-FERRAVATETAL--KRVRWNYSAAVERLQKDLELLS 696
>03_04_0105 -
17322276-17322399,17322516-17322740,17323388-17323588,
17324705-17324794,17324945-17325059,17325238-17325439
Length = 318
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 240 DYWGPAFR---SVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELL 398
D W +F VYE G F +LD K +E CNF + +I++I+ L+
Sbjct: 251 DEWPKSFEINPPVYEDIGLFFFSTELDRNGKSQSHVMETSCNFVMRAYINNIKLLI 306
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 396 LQVRSHAEELHAEISNVDANVKETTEALCIRADEL 500
LQ+R L +IS ++ V+E ++ LC DEL
Sbjct: 236 LQIRGQTAALVTQISGLEQQVEELSKKLCSTEDEL 270
>07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159
Length = 522
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 216 IQEIEGIDDYWGPAFRSVYEG-EGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRE 392
+Q + +D W +V +G E + F+ +D+ K + + FH GF+ S+
Sbjct: 331 LQRFDAVD--WLDLTLAVPQGVEAYRTFMDDMDNLPKCETLVVALIAQFH--GFVPSMLH 386
Query: 393 LLQVRSHAEEL 425
LL+ SH ++L
Sbjct: 387 LLRRCSHVKKL 397
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +3
Query: 279 EGHEAFVQQLDDRIK----QHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAEISNV 446
E H ++ L +IK QH+KE+++L ++D + L Q + ++ +S
Sbjct: 231 EEHVVTIETLRTQIKISEAQHEKELKELKEITSSTYVDQAKSLQQTLEYKQKQIDSLSTS 290
Query: 447 DANVKETTEALCIRADELIRARRVELNIAATIEKMELC 560
+ ++ + + L R + R E + +K +C
Sbjct: 291 NTELQNSIKDLDERL-SAYKQSRAEADEIIQSQKSNIC 327
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 354 CTISQFPYRAALFDHLIVARMLRALHLRKRIGMPAP 247
C IS + +++++ + + LH R+RIG+P P
Sbjct: 759 CCISSSEAKLLIYEYMENGSLHQWLHQRERIGVPGP 794
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,799,424
Number of Sequences: 37544
Number of extensions: 227317
Number of successful extensions: 566
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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