Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c24f
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   5e-15
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    32   0.30 
SB_12983| Best HMM Match : Moricin (HMM E-Value=7)                     29   2.1  
SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)              29   2.8  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   29   2.8  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              29   3.7  
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)          28   4.9  
SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)              28   6.4  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        27   8.5  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       27   8.5  

>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 31/57 (54%), Positives = 47/57 (82%)
 Frame = +3

Query: 261  RSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHA 431
            ++VY+GE  + F+ +L++RIK HDK+IE++CN+HYQGFI+S+ ELL+VR  A +L A
Sbjct: 877  KAVYDGENPQEFLVKLEERIKVHDKDIERMCNYHYQGFIESVNELLKVRGEARKLKA 933


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
 Frame = +3

Query: 285  HEAFVQQLDDRIKQ------HDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAEISNV 446
            +E    QLDD  KQ      + K +E+  N   +   D   E L+    A  L  E+S  
Sbjct: 3055 NELLHAQLDDLRKQITGYQGNIKSLEENSNRLQERIKDLEDENLESHKKASSLECELSTA 3114

Query: 447  DANVKETTEALCIRADELIRARRVELNIAATIEKMELCL 563
            + N+KE          E+ + R   +    TI++ME+C+
Sbjct: 3115 NENLKEAQNNCKDAEIEVSKLREEIIESHKTIKEMEICI 3153


>SB_12983| Best HMM Match : Moricin (HMM E-Value=7)
          Length = 150

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 AFRSVYEGEGHEAFVQQLDDRIK-QHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHA 431
           A RSV E   +EA ++ L+   K   DKE EK   FH+Q   D++ ++ +       +  
Sbjct: 32  AQRSVSEFNKYEA-LEMLETLKKVARDKEDEKSSYFHHQAAFDAVAKVEKAIGKGFRI-L 89

Query: 432 EISNVDANVKETTEALCIRADELIRARR 515
            + +   N +E T+AL +R D  I  R+
Sbjct: 90  IVRDHPENRQEETKAL-VRLDATIATRQ 116


>SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)
          Length = 363

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 423 LHAEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKME 554
           L  E+S  +  +K  T+ LC+   +L R  +   ++   + K+E
Sbjct: 201 LRNELSTKEVEIKRVTDQLCMAESDLTRVEKESASLKKKLSKLE 244


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 493  SALMHSASVVSLTLASTLDISACNSSA*ERTCSNS 389
            S+L+H A  +++++ S +  S CNSS   R+  NS
Sbjct: 2666 SSLVHDAGFLNVSVLSAITFSHCNSSKCSRSFINS 2700


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 234 IDDYWGPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQV 404
           +D Y+   ++S  +     +  ++LDD I++    IE +      G +D I EL++V
Sbjct: 164 VDKYFKDTYQSELDASNFTSIKKRLDDFIEKSSSCIENVEKVLQAGKLDEIIELVEV 220


>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
          Length = 262

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 542 NGSCNVQFDSSSPDQFVCSNAQCFSS 465
           NG C     + +P QF C N +C  S
Sbjct: 178 NGQCKTLSGTCAPGQFKCGNGKCIPS 203


>SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 375 IDSIRELLQVRSHAEELHAEISNVDANVKETTEALCIRADELIRAR 512
           I  + E+L +  H+E+    I     + KE  E L    DE+I AR
Sbjct: 31  IRKVNEILDLEEHSEDEKLAIRQHRDSAKEKAETLRALDDEVIEAR 76


>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
          Length = 406

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 234 IDDYWGPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQV 404
           +D Y+   ++S  +     +  ++LDD I++    IE +      G +D I EL++V
Sbjct: 164 VDKYFIDTYQSELDASNFTSIKKRLDDFIEKSSSCIENVEKVLQAGKLDEIIELVEV 220


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
 Frame = +3

Query: 273  EGEGHEAFVQ--QLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAEISNV 446
            EGE  E  V+  +L   +++ +++IE+L     + F +  REL ++R   E   A +  +
Sbjct: 1352 EGELKERSVETEKLKQTLQEREEQIERL----KEEFQEKSRELDKMRKEVEGGGALVETL 1407

Query: 447  DANVKETTEALCIRADELIRARRVELNIAATIEKME 554
               ++E  E + +  +++   R+V+    A+ +K E
Sbjct: 1408 QELLRERCEEVDVLKEKISDKRQVQDKNPASNDKAE 1443


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 327 HDKEIEKLCNFHYQ---GFIDSIRELLQVRSHAEELHAEISNVDANVKETTEALCIRADE 497
           H+ EIE +   H +    + D +RE  ++  + E LH E  ++ A     ++   +  D 
Sbjct: 488 HEAEIEDIFKAHDELEAKYNDEVREKKELHEYIERLHEEQEDLQAQYCSLSKEHKVITDR 547

Query: 498 LIRARRVELN 527
           L      +LN
Sbjct: 548 LAEIHCSQLN 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,955
Number of Sequences: 59808
Number of extensions: 279714
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)