Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c24f
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-3|AAL02447.3| 817|Caenorhabditis elegans Hypothetical pr... 94 6e-20
Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical pr... 32 0.34
AF067216-8|AAN84852.1| 954|Caenorhabditis elegans Hypothetical ... 32 0.34
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ... 32 0.34
AL132949-17|CAB70108.2| 338|Caenorhabditis elegans Hypothetical... 31 0.60
Z70270-11|CAJ80821.1| 606|Caenorhabditis elegans Hypothetical p... 29 1.8
Z70270-10|CAA94231.1| 726|Caenorhabditis elegans Hypothetical p... 29 1.8
Z68215-18|CAJ80818.1| 606|Caenorhabditis elegans Hypothetical p... 29 1.8
Z68215-17|CAA92458.1| 726|Caenorhabditis elegans Hypothetical p... 29 1.8
AL117202-1|CAB55091.2| 454|Caenorhabditis elegans Hypothetical ... 29 1.8
AF101315-5|AAM34816.1| 457|Caenorhabditis elegans Hypothetical ... 29 2.4
AL032648-8|CAI46618.1| 365|Caenorhabditis elegans Hypothetical ... 29 3.2
AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 29 3.2
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ... 27 7.4
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 9.8
U50068-1|AAB37737.2| 135|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U41026-3|AAL02447.3| 817|Caenorhabditis elegans Hypothetical
protein C28G1.3 protein.
Length = 817
Score = 94.3 bits (224), Expect = 6e-20
Identities = 37/124 (29%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = +3
Query: 216 IQEIEGIDD-YWGPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRE 392
+ E+E D G R++Y+ ++F + L RI +DK I+K+C+FHYQ F+D+++E
Sbjct: 36 LYELETTDSGSMGLVLRAIYDTGDVQSFARALQQRISHYDKNIQKVCSFHYQSFVDAMQE 95
Query: 393 LLQVRSHAEELHAEISNVDANVKETTEALCIRADELIRARRVELNIAATIEKMELCLPLL 572
L++++ +++ E +DA +++ ++ LC + E++R R++ N ++++ +CLP+L
Sbjct: 96 LMKLKEQCQDIKEETVAIDAEIQQISQRLCQKKQEIVRYRKLMKNAKTAMDQIAVCLPVL 155
Query: 573 TTYS 584
Y+
Sbjct: 156 ENYA 159
>Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical
protein C31A11.10 protein.
Length = 273
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 539 GSCNVQFDSSSP-DQFVCSNAQCFSSLFDISIYIRYFSMQFFSMRTDLQQFSY-RIYETL 366
G C+V D+ D F+C+ QC+++ + + I FS FFS + F + + T
Sbjct: 144 GVCDVVIDTPLDCDSFLCAMNQCYTTYWLLHERITTFSNVFFSAVVTFRLFIWNHFFSTQ 203
Query: 365 IVKIAQF 345
+IA F
Sbjct: 204 ATRIALF 210
>AF067216-8|AAN84852.1| 954|Caenorhabditis elegans Hypothetical
protein C35E7.5b protein.
Length = 954
Score = 31.9 bits (69), Expect = 0.34
Identities = 22/102 (21%), Positives = 51/102 (50%)
Frame = +3
Query: 216 IQEIEGIDDYWGPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIREL 395
IQ +E + + +G Y+ E ++ V + ++ ++ +EK CN H ++S++++
Sbjct: 486 IQTVEDVLNVYGK-----YQVEANKKMVDEAVEKHREAISSLEKECNMH----LESLKKM 536
Query: 396 LQVRSHAEELHAEISNVDANVKETTEALCIRADELIRARRVE 521
R E L+AE+ ++K+ E + E+++ + E
Sbjct: 537 NDSRKEFEVLNAELEKKVFDLKKVLEMEQGKIAEMLKNKERE 578
>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
protein C35E7.5a protein.
Length = 1262
Score = 31.9 bits (69), Expect = 0.34
Identities = 22/102 (21%), Positives = 51/102 (50%)
Frame = +3
Query: 216 IQEIEGIDDYWGPAFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIREL 395
IQ +E + + +G Y+ E ++ V + ++ ++ +EK CN H ++S++++
Sbjct: 486 IQTVEDVLNVYGK-----YQVEANKKMVDEAVEKHREAISSLEKECNMH----LESLKKM 536
Query: 396 LQVRSHAEELHAEISNVDANVKETTEALCIRADELIRARRVE 521
R E L+AE+ ++K+ E + E+++ + E
Sbjct: 537 NDSRKEFEVLNAELEKKVFDLKKVLEMEQGKIAEMLKNKERE 578
>AL132949-17|CAB70108.2| 338|Caenorhabditis elegans Hypothetical
protein Y53F4B.19 protein.
Length = 338
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -3
Query: 342 QFPYRAALFDHL--IVARMLRA--LHLRKRIGMPAPNNHLYLRFPESLHSFSEIILFFFS 175
Q + +FDH ++ RML+A + K + MP PN +LY++ + + S++ +
Sbjct: 215 QVDFNNVIFDHRNRVLDRMLKANVVEKEKLLYMPTPNLNLYMQNLRNQKNRSKLAVLLER 274
Query: 174 NSIAIKGIK 148
A KG++
Sbjct: 275 RGDAFKGVQ 283
>Z70270-11|CAJ80821.1| 606|Caenorhabditis elegans Hypothetical
protein C53B4.8b protein.
Length = 606
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 312 DRIKQHDKEIEKLCNFHYQGFIDSIRELL 398
D++K KE++KL HY +I ++ LL
Sbjct: 34 DKMKMDSKEVDKLQQLHYGWYIQAVSSLL 62
>Z70270-10|CAA94231.1| 726|Caenorhabditis elegans Hypothetical
protein C53B4.8a protein.
Length = 726
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 312 DRIKQHDKEIEKLCNFHYQGFIDSIRELL 398
D++K KE++KL HY +I ++ LL
Sbjct: 34 DKMKMDSKEVDKLQQLHYGWYIQAVSSLL 62
>Z68215-18|CAJ80818.1| 606|Caenorhabditis elegans Hypothetical
protein C53B4.8b protein.
Length = 606
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 312 DRIKQHDKEIEKLCNFHYQGFIDSIRELL 398
D++K KE++KL HY +I ++ LL
Sbjct: 34 DKMKMDSKEVDKLQQLHYGWYIQAVSSLL 62
>Z68215-17|CAA92458.1| 726|Caenorhabditis elegans Hypothetical
protein C53B4.8a protein.
Length = 726
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 312 DRIKQHDKEIEKLCNFHYQGFIDSIRELL 398
D++K KE++KL HY +I ++ LL
Sbjct: 34 DKMKMDSKEVDKLQQLHYGWYIQAVSSLL 62
>AL117202-1|CAB55091.2| 454|Caenorhabditis elegans Hypothetical
protein Y47D3A.1 protein.
Length = 454
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -1
Query: 581 VSSEER*TQFHFFNGS--CNVQFD 516
+S ER FHFFN S CN+ FD
Sbjct: 419 ISENERGKSFHFFNRSINCNINFD 442
>AF101315-5|AAM34816.1| 457|Caenorhabditis elegans Hypothetical
protein T22H9.1 protein.
Length = 457
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 255 AFRSVYEGEGHEAFVQQLDDRIKQHDKEIEKLCNFHYQGFIDSIR--ELLQVRSHAEELH 428
AFR++Y G E ++ D R + +++C + F+D IR E+ +R+
Sbjct: 292 AFRNIYGGHEQEKKKKKWDPRFDARAGDFKEVCFENNYQFLDEIRTGEMQDLRNEYNTAR 351
Query: 429 AE 434
AE
Sbjct: 352 AE 353
>AL032648-8|CAI46618.1| 365|Caenorhabditis elegans Hypothetical
protein Y54G9A.10 protein.
Length = 365
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 16 SCGLIYFSVINVLKNINNNQFQILSSINTLVD*MIINRNLTQLRLNTFYCN*IRKKEE 189
+C +YF++ ++ N Q + +++ LV I ++ R +TF C ++KK E
Sbjct: 276 TCFALYFNIFPQADSLLNLCMQAVINLSALVMCPAILYSVDSFRNHTFLCKKLKKKRE 333
>AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical
protein C44E4.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = -1
Query: 530 NVQFDSSSPDQFVCSNAQCFSSLFDISIYIRYFSM--QFF---SMRTDLQQFSYRIYET 369
NV F S S DQ +C A + + + +++ FS Q F S TD QQF YRI +T
Sbjct: 26 NVHFSSKSLDQNLCLRAPS-NEMITLQ-HMKVFSNDNQLFCDYSKCTDSQQFLYRILDT 82
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 393 LLQVRSHAEELHA-EISNVDANVKETTEALCIRADELIRARRVELNIAATIEKME 554
LL R+H ++L A E+ V +N TTEA C+++ I A V N A ++K +
Sbjct: 382 LLTSRTHNKDLCAFELYKVASNSDGTTEAACVKSTG-INALWVARNRFAVLDKAQ 435
>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
protein F56H1.5 protein.
Length = 1015
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 303 QLDDRIKQHD-KEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAEISNVDANVKETTEAL 479
Q D R + + + + ++ HY+ F+ ++ Q+R H + ++SN+ +VK T E +
Sbjct: 588 QFDSRFESGNLRMVIQVAPTHYELFLSP--DVNQLRDHYQWFFFQVSNMRKSVKYTFEIV 645
Query: 480 -CIRADEL 500
C+++ L
Sbjct: 646 NCLKSTSL 653
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 297 VQQLDDRIKQHDKEIEKL---CNFHYQGFIDSIRELLQVRSHAEELHAEISNVDANVKET 467
+ + D+ I +HDK+IEK+ C + ID E+ + E +I + +E
Sbjct: 947 IAKCDENISRHDKDIEKMKKKCEELMEKAIDD-EEVKSKKETVERFEKQIKKLQTKGEEM 1005
Query: 468 TE 473
T+
Sbjct: 1006 TK 1007
>U50068-1|AAB37737.2| 135|Caenorhabditis elegans Hypothetical
protein C01G5.7 protein.
Length = 135
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 297 VQQLDDRIKQHDKEIEKLCNFHYQGFIDSIRELLQVRSHAEELHAE 434
+ Q DD++K+ +++ ++ + + S +ELL+ H E+L +E
Sbjct: 53 ISQNDDKVKERYRKVLRIAQLQIEHLLKSQQELLK---HMEKLESE 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,230
Number of Sequences: 27780
Number of extensions: 234808
Number of successful extensions: 746
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -