Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c24f
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.96 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 298 TNASCPSPS*TDRNAGPQ 245
           TN SCPSP  T +  G Q
Sbjct: 614 TNQSCPSPPVTTKRDGTQ 631


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 255 PAPNNHLYLRFPESLHSFS 199
           P  NNHLY   P+S   FS
Sbjct: 84  PEYNNHLYGSTPDSRDYFS 102



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 237 DDYWGPAFRSVY 272
           DDY GPA   VY
Sbjct: 147 DDYVGPAMELVY 158


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 216 IQEIEGIDDYWGPAFRSVYEGEGH 287
           +QE +  D Y+G  F   YE   H
Sbjct: 423 VQETDKYDAYYGNRFSGEYEIPAH 446


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 497 IDQGSKSRTEHCSYH*KNGTVFTSPHYL 580
           ID+G +S+T+   +    GTV    +Y+
Sbjct: 219 IDEGKESKTKLSQWRKDGGTVKKKVNYV 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,874
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)