Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c22r
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220...    30   2.2  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    28   6.9  
07_01_0017 - 114497-114547,114700-114816,114917-114997,115312-11...    28   9.1  
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525...    28   9.1  

>11_01_0293 +
           2207782-2208148,2208515-2208567,2208622-2208698,
           2209377-2209772,2209953-2210111,2210522-2210933
          Length = 487

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +2

Query: 437 IQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVIPVIGWLWSLQSGSTNKTKTY 616
           + T +  + +K+ +  + F EG     ++T+G   K  +  + GWL        N +KT+
Sbjct: 284 LNTGHWWNYEKTIRSGTYFQEGDAVKMDMTVGDAYKRSIQTLFGWL----HNEVNSSKTH 339

Query: 617 VNLNTVVTIQF 649
           V   T   + F
Sbjct: 340 VIFRTYAPVHF 350


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 520 FGLKFFAFVKDRFAFMGLFKIARIFCLDFYLP--IKNFSPIYLIVI 389
           FGLKF+  V   FA  G    A+++C +   P  +  F+P+  I++
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLWCTEKKGPVFVTMFNPLSTIMV 337


>07_01_0017 -
           114497-114547,114700-114816,114917-114997,115312-115371,
           116029-116238,116412-116720,116790-117080
          Length = 372

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 361 PTHFQEGTVILFVDAIGTGSAFSLASTTIGALFYQYY*FKQH 236
           P H   G ++L V AIG   AF  +   IG L  +   F  H
Sbjct: 243 PLHVLHGIIVLCVSAIGCPDAFIHSVQEIGPLKIERLDFSDH 284


>02_01_0704 -
           5254458-5254760,5255091-5255182,5255285-5255501,
           5255972-5256068,5256175-5256415,5257100-5257180,
           5257236-5257383
          Length = 392

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 742 QRKXXXXXXXXXXXNTENIKTEKILEALRGIKLNSNHSIKI 620
           QRK            TEN + E++ E+L G+K +++ ++ +
Sbjct: 167 QRKAVVANRKRTARPTENARPEQLAESLEGVKTDTDRNVSV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,265
Number of Sequences: 37544
Number of extensions: 295799
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)