Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c22f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.2  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   3.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.9  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   6.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.5  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   8.6  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
 Frame = +3

Query: 234 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 401
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   D   Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658

Query: 402 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 569
           V   L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718

Query: 570 DSSKLV 587
            SS+ V
Sbjct: 719 SSSQSV 724


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 319 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 471
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 430 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 576
           P+LTT+NT  + S    SS   +E+ S+  +    + I++ +TP   T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 507  KLEGDAKTAVDNFIKEHSKEIDSSK 581
            K+EGDAKT  DN +++  K  D  K
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK 1330


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 477 LDETFSCHRICSCKRWRSYYSQSP 406
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 144 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 302
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 280 SSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 381
           +S  SR I    PSSP+TPI   P+  + +LSL++Y
Sbjct: 534 ASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,377
Number of Sequences: 5004
Number of extensions: 41915
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)