Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c21r
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.29
02_05_0979 + 33268294-33269595 28 1.2
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 27 2.1
04_03_0314 - 14238620-14240128 27 2.1
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 2.7
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 2.7
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 27 3.6
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 26 4.7
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 26 4.7
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 26 6.3
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 26 6.3
06_01_0351 + 2537022-2538281 26 6.3
01_03_0108 - 12628711-12629178 26 6.3
06_02_0049 - 10945765-10945893,10946042-10946110,10947278-10947946 25 8.3
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 25 8.3
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 25 8.3
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 141 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 40
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 83 RWGNLPFLPPSKEKCSDRHNRHRA*C*SISSGCVAALRIRILGHRKMAIYLWQRKTTMIV 262
+W +L PP +E + RH H S C + ++I GH YLW T I+
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHIL 151
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 123 NVPTATTAIAPSAKALAADVL 185
++PT TTA +P+ KAL D+L
Sbjct: 25 HLPTTTTAASPALKALGEDLL 45
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 108 HQVKRNVPTATTAIAPSAKALAADV 182
H + N+ T A+ P+A+ALAAD+
Sbjct: 145 HPLSPNLSTLAVALTPAAEALAADL 169
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 22 YFSAALCSATIFADSRLELRAVGEPSFL 105
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 74 SSVRWGNLPFLPPSKEKCSDRHNRHRA 154
S +RW FLPPS + SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 167 CFSTRRDGGCGG 132
C RRDGGCGG
Sbjct: 87 CLHRRRDGGCGG 98
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 202 NSWSSQNGNLFVATKNDNDCDGTLCTVQIENET 300
N WS N NL + DG++ ++ +N+T
Sbjct: 539 NKWSLSNSNLCITNDMKPSKDGSILELKCDNKT 571
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 44 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHN 142
L SSP+ + S + G LPFL P KC + N
Sbjct: 108 LYTSSPMNSGSCRKTGYLPFL-PQPPKCEQQQN 139
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 292 FQSVPCKVFHHNHCRFSLPQINCHFAMTKNSNSQ 191
F+ PC HH+H SLP + +S+S+
Sbjct: 8 FKWAPCPHAHHHHSTSSLPSSSSSSTSAPSSSSR 41
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 126 VPTATTAIAPSAKALAA 176
VPTATTA AP+A AA
Sbjct: 123 VPTATTASAPAAAVTAA 139
>06_01_0351 + 2537022-2538281
Length = 419
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA-*C*SISSGCVAALRI-RILGH 214
L++S R L RW NLP + PS R R +SSGC +++ ++GH
Sbjct: 282 LVASNDRLLMVRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGH 339
>01_03_0108 - 12628711-12629178
Length = 155
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 54 LRRFAP*APCGGGTFLSCH 110
LR+ P A CG GTF++ H
Sbjct: 118 LRKECPNAECGAGTFMANH 136
>06_02_0049 - 10945765-10945893,10946042-10946110,10947278-10947946
Length = 288
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 296 SFSICTVQSVPSQSLSFFVAT 234
SF +CT+ S + FFVAT
Sbjct: 210 SFPLCTIYSATKRHAPFFVAT 230
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 164 FSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSA 33
F R DGG N+ + + A GSP R + E+ + A ++A
Sbjct: 431 FLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAA 474
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 66 AP*APCGGGTFLSCHQVKRNVPTATTAIAPSAKALA 173
AP PC + KR+ ATT +AP A A
Sbjct: 424 APQQPCSDAVRCNDDGEKRSAEVATTEVAPDGSASA 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,155,067
Number of Sequences: 37544
Number of extensions: 174174
Number of successful extensions: 533
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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