Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c21r
         (300 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U54559-1|AAD03465.1|  352|Homo sapiens translation initiation fa...    29   2.7  
CR456906-1|CAG33187.1|  352|Homo sapiens EIF3S3 protein.               29   2.7  
BT019594-1|AAV38401.1|  352|Homo sapiens eukaryotic translation ...    29   2.7  
BC090880-1|AAH90880.1|  349|Homo sapiens EIF3H protein protein.        29   2.7  
BC000386-1|AAH00386.1|  352|Homo sapiens eukaryotic translation ...    29   2.7  
AK222620-1|BAD96340.1|  352|Homo sapiens eukaryotic translation ...    29   2.7  
AF092576-1|AAC84044.1|  352|Homo sapiens translation initiation ...    29   2.7  
U37028-1|AAB38547.1| 1162|Homo sapiens leukointegrin alpha d cha...    28   6.2  
BC038237-1|AAH38237.1| 1169|Homo sapiens ITGAX protein protein.        28   6.2  
AK222520-1|BAD96240.1|  352|Homo sapiens eukaryotic translation ...    28   6.2  
AB208945-1|BAD92182.1| 1177|Homo sapiens PREDICTED: integrin, al...    28   6.2  
M81695-1|AAA59180.1| 1163|Homo sapiens eukocyte adhesion glycopr...    27   8.2  
AB040955-1|BAA96046.1| 1044|Homo sapiens KIAA1522 protein protein.     27   8.2  

>U54559-1|AAD03465.1|  352|Homo sapiens translation initiation
           factor eIF3 p40 subunit protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344


>CR456906-1|CAG33187.1|  352|Homo sapiens EIF3S3 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344


>BT019594-1|AAV38401.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344


>BC090880-1|AAH90880.1|  349|Homo sapiens EIF3H protein protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 283 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 341


>BC000386-1|AAH00386.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344


>AK222620-1|BAD96340.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa variant
           protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344


>AF092576-1|AAC84044.1|  352|Homo sapiens translation initiation
           factor eIF3 p40 subunit protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 240
           ++ ++ GEP        ++F+PPQPP+R+  +L   Q    C  N   +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344


>U37028-1|AAB38547.1| 1162|Homo sapiens leukointegrin alpha d chain
           protein.
          Length = 1162

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 19  NYFSAALCSATIFADSRLELRAVGEPSF 102
           +YF A+LCS  + +D   +L  +G P +
Sbjct: 455 SYFGASLCSVDVDSDGSTDLILIGAPHY 482


>BC038237-1|AAH38237.1| 1169|Homo sapiens ITGAX protein protein.
          Length = 1169

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 19  NYFSAALCSATIFADSRLELRAVGEPSF 102
           +YF A+LCS  + +D   +L  +G P +
Sbjct: 456 SYFGASLCSVDVDSDGSTDLVLIGAPHY 483


>AK222520-1|BAD96240.1|  352|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 3 gamma, 40kDa variant
           protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 70  LELRAVGEPSFLATK*REMFRPPQPPSRL 156
           ++ ++ GEP        ++F+PPQPP+R+
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARM 314


>AB208945-1|BAD92182.1| 1177|Homo sapiens PREDICTED: integrin, alpha
           D variant protein.
          Length = 1177

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 19  NYFSAALCSATIFADSRLELRAVGEPSF 102
           +YF A+LCS  + +D   +L  +G P +
Sbjct: 471 SYFGASLCSVDVDSDGSTDLILIGAPHY 498


>M81695-1|AAA59180.1| 1163|Homo sapiens eukocyte adhesion
           glycoprotein precursor protein.
          Length = 1163

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 19  NYFSAALCSATIFADSRLELRAVGEPSF 102
           +YF A+LCS  +  D   +L  +G P +
Sbjct: 456 SYFGASLCSVDVDTDGSTDLVLIGAPHY 483


>AB040955-1|BAA96046.1| 1044|Homo sapiens KIAA1522 protein protein.
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 46  ATIFADSRLELRAVGEPSFLATK*REMFRPPQPPSRLVLKH*QRMCCCP 192
           +T  A   L +R+ G+ S  +   R++ RPP PP R    H QR    P
Sbjct: 418 STAEASDTLSIRSSGQLSGRSVSLRKLKRPPPPPRRTHSLH-QRGLAVP 465


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,159,284
Number of Sequences: 237096
Number of extensions: 848663
Number of successful extensions: 1791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)