Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c21r
(300 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 1.4
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 1.4
AF039046-6|AAB94216.1| 66|Caenorhabditis elegans Caenacin (cae... 26 4.4
AF024503-16|AAG24086.2| 287|Caenorhabditis elegans Serpentine r... 26 5.8
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 25 7.6
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 25 7.6
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 25 7.6
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical pr... 25 7.6
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 25 7.6
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 25 7.6
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 2 YYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 151
Y+F ++I ++ LLSS + S+++GN + EK S HR
Sbjct: 1243 YHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 2 YYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 151
Y+F ++I ++ LLSS + S+++GN + EK S HR
Sbjct: 1243 YHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292
>AF039046-6|AAB94216.1| 66|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 4 protein.
Length = 66
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 32 LHYVLLLSSPIRALSSVRWGNLPF 103
L Y+L+L I A+SS +WG P+
Sbjct: 2 LRYILVLLVAIIAMSSAQWGYGPY 25
>AF024503-16|AAG24086.2| 287|Caenorhabditis elegans Serpentine
receptor, class x protein23 protein.
Length = 287
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 211 SSQNGNLFVATKNDNDCDGTLCTVQI 288
SS NG+ + TKN C+ T+C + +
Sbjct: 33 SSMNGSFGIITKNHAICNLTMCLLYV 58
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical
protein C47D12.2 protein.
Length = 689
Score = 25.4 bits (53), Expect = 7.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 227 IYLWQRKTTMIVMEHFARY 283
IYLWQ ++++ + AR+
Sbjct: 99 IYLWQTSNALLILRYIARF 117
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 PCELEFLVIAKWQFICGNE 245
PCEL +V+AK+QF N+
Sbjct: 4205 PCELADVVVAKYQFEVPNQ 4223
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 202 NSWSSQNGNLFVATKNDNDCD 264
N W+ QN N + +N+ CD
Sbjct: 566 NLWTKQNSNTTLIKRNETTCD 586
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,519,275
Number of Sequences: 27780
Number of extensions: 137208
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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