Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c21r
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   5.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   5.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 150 RWRLWRSEHFSLLGGK 103
           RW L   E   L+GG+
Sbjct: 261 RWNLTSGERVGLVGGR 276


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 138 WRSEHFSLLGG 106
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 280 PCKVFHHNHCRFSLPQINCH 221
           P    HH+H   +L +  CH
Sbjct: 281 PSLASHHSHLSSALGRSACH 300


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 196 N*NSWSSQNGNLFVATKNDNDCD 264
           N N+ ++ NGN   A+ N+N+ D
Sbjct: 249 NNNNGANDNGNGNGASNNNNNGD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,471
Number of Sequences: 438
Number of extensions: 1778
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)